BacMap

Definition	Bacillus licheniformis ATCC 14580, complete genome.
Accession	NC_006322
Length	4,222,645

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The map label for this gene is yohF [C]

Identifier: 52786017

GI number: 52786017

Start: 2232252

End: 2232998

Strand: Reverse

Name: yohF [C]

Synonym: BLi02273

Alternate gene names: 52786017

Gene position: 2232998-2232252 (Counterclockwise)

Preceding gene: 52786018

Following gene: 52786016

Centisome position: 52.88

GC content: 50.33

Gene sequence:

>747_bases
TTGAACAGTAAAGAAACTGTCGTCATTACAGGCGGGGCAAAAGGCATTGGAAGAGACCTCGTGGCCGCCTATGCTCAAAA
AGGTTTTATCGTCGTATTCGCCGACGTATTGAAGGAAGAGGGTGAACAGCTTGAAAAAGAGCTGACCGCTTCCGGTGCGC
GGGTCCAATTTGCACCTTGTGATGTAGCTTCTGAAGAAGACGTGAAACGGCTGATGCAGGAAGCTTCCCGAAACGGCCGT
TCGATATCGGCGCTCATCAATAATGCGGGCCGATCAGTTTGGAAGTCCCCTTACGACTTGACGGCTGAAGAATGGGACGG
CGTCCTGAATACGAATTTGAAAGGCGCGTTTCTTTGCGCAAGAGAAGCGGCCAAAAGAATGAAAGAGGCGAAAACAGGCG
GTGCCATCGTCAATATCGCTTCGACAAGGGCATTTATGTCCGAACCGGACTCAGAAGCCTATGCCGCGTCAAAAGGGGGC
TTAATAGCTTTGACTCACGCATTGGCCGCGTCTTTAAGCAAAGATTCAATCGTGGTCAACAGCATTTCCCCGGGCTGGAT
TGAAACCGGTGATTATACTGCCCTGCGGCCTATTGACCACGCGCAGCATTTGTCAAACAGGGTCGGCCGCCCACAGGATA
TCGTCAAAGCATGCTTTTATTTGACCGATCCGGACAATCGCTTCGTCACCGGTACAAACATAACGGTGGACGGCGGAATG
ACAAAAAAAATGATTTATGAAGAATAG

Upstream 100 bases:

>100_bases
TCTATCAATTGACAGACAAGGGAACGGCGCTGGAGCCTGTCCTCAAGGAGATACAAACCTGGGCCGAAAGCCATTGTGAT
CCGGAAGGGAGCTGACCGGA

Downstream 100 bases:

>100_bases
CCCAAACGTTTCCCGACTTTATGAATACCTTTACTATAGGCAGACATAAAGGAGGATAAAAGCCAATGAACCCTCATATG
CTTTATTCGAGATCAGGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNSKETVVITGGAKGIGRDLVAAYAQKGFIVVFADVLKEEGEQLEKELTASGARVQFAPCDVASEEDVKRLMQEASRNGR
SISALINNAGRSVWKSPYDLTAEEWDGVLNTNLKGAFLCAREAAKRMKEAKTGGAIVNIASTRAFMSEPDSEAYAASKGG
LIALTHALAASLSKDSIVVNSISPGWIETGDYTALRPIDHAQHLSNRVGRPQDIVKACFYLTDPDNRFVTGTNITVDGGM
TKKMIYEE

Sequences:

>Translated_248_residues
MNSKETVVITGGAKGIGRDLVAAYAQKGFIVVFADVLKEEGEQLEKELTASGARVQFAPCDVASEEDVKRLMQEASRNGR
SISALINNAGRSVWKSPYDLTAEEWDGVLNTNLKGAFLCAREAAKRMKEAKTGGAIVNIASTRAFMSEPDSEAYAASKGG
LIALTHALAASLSKDSIVVNSISPGWIETGDYTALRPIDHAQHLSNRVGRPQDIVKACFYLTDPDNRFVTGTNITVDGGM
TKKMIYEE
>Mature_248_residues
MNSKETVVITGGAKGIGRDLVAAYAQKGFIVVFADVLKEEGEQLEKELTASGARVQFAPCDVASEEDVKRLMQEASRNGR
SISALINNAGRSVWKSPYDLTAEEWDGVLNTNLKGAFLCAREAAKRMKEAKTGGAIVNIASTRAFMSEPDSEAYAASKGG
LIALTHALAASLSKDSIVVNSISPGWIETGDYTALRPIDHAQHLSNRVGRPQDIVKACFYLTDPDNRFVTGTNITVDGGM
TKKMIYEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=28.8, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=30.2521008403361, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=30, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=32.5490196078431, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=26.8774703557312, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=32.034632034632, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=27.1604938271605, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=30.9803921568627, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI109715829, Length=225, Percent_Identity=28.4444444444444, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI31542939, Length=190, Percent_Identity=29.4736842105263, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.2817679558011, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=25.3112033195021, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=23.9837398373984, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4504505, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=31.6872427983539, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=30.4526748971193, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=30.7053941908714, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=32.258064516129, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=28.8065843621399, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787335, Length=237, Percent_Identity=29.535864978903, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=26.5060240963855, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=28.9256198347107, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=29.4605809128631, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=27.5303643724696, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=24.5059288537549, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=26.7716535433071, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=25.130890052356, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=237, Percent_Identity=24.0506329113924, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=29.9180327868852, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=239, Percent_Identity=31.3807531380753, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=27.8884462151394, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.0076335877863, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=27.6, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=26.1363636363636, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=26.7175572519084, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=25.3787878787879, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=26.8292682926829, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=244, Percent_Identity=27.0491803278689, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=25.3061224489796, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=26.3358778625954, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=26.1363636363636, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=271, Percent_Identity=29.1512915129151, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=24.7967479674797, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=26.0536398467433, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=24.6268656716418, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=24.0816326530612, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=25.3787878787879, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=246, Percent_Identity=25.2032520325203, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=26.2548262548263, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559964, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=27.3764258555133, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=201, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=24.7191011235955, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=154, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=29.0155440414508, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=225, Percent_Identity=29.7777777777778, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=244, Percent_Identity=26.2295081967213, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=31.404958677686, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=29.3650793650794, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=28.3400809716599, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=29.6, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=27.2, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=26.7206477732794, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=28.8537549407115, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=26.2096774193548, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24584752, Length=183, Percent_Identity=30.6010928961749, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571387, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007236, Length=215, Percent_Identity=27.4418604651163, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=30.0518134715026, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641232, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24586328, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007234, Length=227, Percent_Identity=29.0748898678414, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26705; Mature: 26705

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKETVVITGGAKGIGRDLVAAYAQKGFIVVFADVLKEEGEQLEKELTASGARVQFAPC
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECC
DVASEEDVKRLMQEASRNGRSISALINNAGRSVWKSPYDLTAEEWDGVLNTNLKGAFLCA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCHHCCCCCHHHHHH
REAAKRMKEAKTGGAIVNIASTRAFMSEPDSEAYAASKGGLIALTHALAASLSKDSIVVN
HHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHCCCCCEEHHHHHHHHHCCCCCEEEE
SISPGWIETGDYTALRPIDHAQHLSNRVGRPQDIVKACFYLTDPDNRFVTGTNITVDGGM
CCCCCCEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEECCEEEECCCC
TKKMIYEE
CCHHCCCC
>Mature Secondary Structure
MNSKETVVITGGAKGIGRDLVAAYAQKGFIVVFADVLKEEGEQLEKELTASGARVQFAPC
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECC
DVASEEDVKRLMQEASRNGRSISALINNAGRSVWKSPYDLTAEEWDGVLNTNLKGAFLCA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCHHCCCCCHHHHHH
REAAKRMKEAKTGGAIVNIASTRAFMSEPDSEAYAASKGGLIALTHALAASLSKDSIVVN
HHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHCCCCCEEHHHHHHHHHCCCCCEEEE
SISPGWIETGDYTALRPIDHAQHLSNRVGRPQDIVKACFYLTDPDNRFVTGTNITVDGGM
CCCCCCEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEECCEEEECCCC
TKKMIYEE
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550425; 10360571 [H]