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The map label for this gene is ypfA [H]

Identifier: 52785971

GI number: 52785971

Start: 2184987

End: 2185652

Strand: Reverse

Name: ypfA [H]

Synonym: BLi02226

Alternate gene names: 52785971

Gene position: 2185652-2184987 (Counterclockwise)

Preceding gene: 52785972

Following gene: 52785970

Centisome position: 51.76

GC content: 34.38

Gene sequence:

>666_bases
TTGTTATCTTTAGGAAATATTTTAACAATAGAATTTGAAAACGAAATTCAAGAGTATGTCCTCGCGAAAAGCAAAGTGCT
ATCCATTGAGGACAATGTTTTAAGAGTACATTATCCTGTTGATGAAGAAACAGGGAGAACTGTTATTATTCCAACAAATA
CAGTAGCAATAGTTCACTTTATAAATGAGCAACAAGTCCCATATAAATTTACCAGTGTAATACAGGGACGAGAGATCTAT
CAGGATATACCTGTATTAAATATGTATTTACCCGAAGAAGATCAAATGACAAAAATTCAAAGACGGCAATTTTTTAGAGT
AAATACAACGATTCCTGTCACTGTCCGCCCATATGGATCTGGTTCAATGTTTAAAACATATACAGCAAATATCAGTGCTG
GAGGCGCTGCGTTAATTATTGAAGAGACGCAAATACACGAAGCGGAAGAGGATTTAAATTTAAGCATTCATCTGCCAAAT
GAGGGACATGATGAAAATGTGATTGACGTTTATGCTCAAGTCAAACGCACTTACATAGATCGGAGAACAAACAAACAGAT
CATGACAGTTGAATTTATCAAGATGGATGAACATGATGAACAAGCACTTGTACATTATTGCATAAAATTGCAATTGGAAG
AAAGAAGAAAACTGAAATCTGATTAG

Upstream 100 bases:

>100_bases
CCGTTTACGTAATTTCTCAATGCTTTCTCCTTTTCTTTTTTAAATTTATGTGTCATAGTACCGATATAATGATTAAGTAG
AATTGAAAGAGTGATGTCCA

Downstream 100 bases:

>100_bases
AATATTAATTTTAACCTGTTATATGATGCAGCTTACAGTAGGTGTCATCCCCCAAAAGTTGAGAAAGACCTGAAATCTGC
CTTTTTTTCTTTCTCGCCAC

Product: YpfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MLSLGNILTIEFENEIQEYVLAKSKVLSIEDNVLRVHYPVDEETGRTVIIPTNTVAIVHFINEQQVPYKFTSVIQGREIY
QDIPVLNMYLPEEDQMTKIQRRQFFRVNTTIPVTVRPYGSGSMFKTYTANISAGGAALIIEETQIHEAEEDLNLSIHLPN
EGHDENVIDVYAQVKRTYIDRRTNKQIMTVEFIKMDEHDEQALVHYCIKLQLEERRKLKSD

Sequences:

>Translated_221_residues
MLSLGNILTIEFENEIQEYVLAKSKVLSIEDNVLRVHYPVDEETGRTVIIPTNTVAIVHFINEQQVPYKFTSVIQGREIY
QDIPVLNMYLPEEDQMTKIQRRQFFRVNTTIPVTVRPYGSGSMFKTYTANISAGGAALIIEETQIHEAEEDLNLSIHLPN
EGHDENVIDVYAQVKRTYIDRRTNKQIMTVEFIKMDEHDEQALVHYCIKLQLEERRKLKSD
>Mature_221_residues
MLSLGNILTIEFENEIQEYVLAKSKVLSIEDNVLRVHYPVDEETGRTVIIPTNTVAIVHFINEQQVPYKFTSVIQGREIY
QDIPVLNMYLPEEDQMTKIQRRQFFRVNTTIPVTVRPYGSGSMFKTYTANISAGGAALIIEETQIHEAEEDLNLSIHLPN
EGHDENVIDVYAQVKRTYIDRRTNKQIMTVEFIKMDEHDEQALVHYCIKLQLEERRKLKSD

Specific function: Unknown

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875 [H]

Pfam domain/function: PF07238 PilZ [H]

EC number: NA

Molecular weight: Translated: 25657; Mature: 25657

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLGNILTIEFENEIQEYVLAKSKVLSIEDNVLRVHYPVDEETGRTVIIPTNTVAIVHF
CCCCCCEEEEEEHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEE
INEQQVPYKFTSVIQGREIYQDIPVLNMYLPEEDQMTKIQRRQFFRVNTTIPVTVRPYGS
ECCCCCCCHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHEEEECCEEEEEEEECCC
GSMFKTYTANISAGGAALIIEETQIHEAEEDLNLSIHLPNEGHDENVIDVYAQVKRTYID
CCEEEEEEEEECCCCEEEEEEECHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
RRTNKQIMTVEFIKMDEHDEQALVHYCIKLQLEERRKLKSD
CCCCCEEEEEEEEEECCCCHHHHHHHHHHEEEHHHHCCCCC
>Mature Secondary Structure
MLSLGNILTIEFENEIQEYVLAKSKVLSIEDNVLRVHYPVDEETGRTVIIPTNTVAIVHF
CCCCCCEEEEEEHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEE
INEQQVPYKFTSVIQGREIYQDIPVLNMYLPEEDQMTKIQRRQFFRVNTTIPVTVRPYGS
ECCCCCCCHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHEEEECCEEEEEEEECCC
GSMFKTYTANISAGGAALIIEETQIHEAEEDLNLSIHLPNEGHDENVIDVYAQVKRTYID
CCEEEEEEEEECCCCEEEEEEECHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
RRTNKQIMTVEFIKMDEHDEQALVHYCIKLQLEERRKLKSD
CCCCCEEEEEEEEEECCCCHHHHHHHHHHEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]