Click here to switch to the map view.

The map label for this gene is yvdR [H]

Identifier: 52785767

GI number: 52785767

Start: 1962775

End: 1963092

Strand: Direct

Name: yvdR [H]

Synonym: BLi02011

Alternate gene names: 52785767

Gene position: 1962775-1963092 (Clockwise)

Preceding gene: 52785766

Following gene: 52785768

Centisome position: 46.48

GC content: 46.23

Gene sequence:

>318_bases
ATGCCATGGATGTTTTTAGTGATTTCCGGAATCGAAGAGGTTATTGCCGCCATCGCTATGAAATATGTAGACGGCACAAG
AAAAAAATGGCCGATTATCGTCATGGTGTTGGGGTTTGGCTTGTCTTTTTTCTGCCTTTCAAAAGCAATGCAGATGCTAT
CAGCCGGTGTTGCATATGCCGTATGGACCGGAATCGGCAGCATCGGCATTACGGCAGTCAGTTTATTTTGGTTTAAGGAG
CGTATTCGTGCTCCGCAGCTCATCTCGCTTGGCTTTATTATAATCGGGGTGATCGGCCTGCGCCTTACATCATCTTAA

Upstream 100 bases:

>100_bases
CAGGAGGGCAAATATTCTTTTTGATCGTGCTGTTGGGAGGCATTATTGGCATGAAGATGTTTACAAAAGAGAACAATGCC
CAGTCAGGAGGTGATGAATG

Downstream 100 bases:

>100_bases
ATTTTAATTTGCATTGGAGGTTGCTGATATGATTAATCAGCTTAAATTGCGTCCGCTTGAAAGAGAAGACCTTCCGTTTG
TCCACCGTCTTAACAACGAT

Product: YvdR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MPWMFLVISGIEEVIAAIAMKYVDGTRKKWPIIVMVLGFGLSFFCLSKAMQMLSAGVAYAVWTGIGSIGITAVSLFWFKE
RIRAPQLISLGFIIIGVIGLRLTSS

Sequences:

>Translated_105_residues
MPWMFLVISGIEEVIAAIAMKYVDGTRKKWPIIVMVLGFGLSFFCLSKAMQMLSAGVAYAVWTGIGSIGITAVSLFWFKE
RIRAPQLISLGFIIIGVIGLRLTSS
>Mature_104_residues
PWMFLVISGIEEVIAAIAMKYVDGTRKKWPIIVMVLGFGLSFFCLSKAMQMLSAGVAYAVWTGIGSIGITAVSLFWFKER
IRAPQLISLGFIIIGVIGLRLTSS

Specific function: Suppresses A Groel Mutation And Mimics The Effect Of Groe Overexpression. Could Act As A Chaperone. [C]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family [H]

Homologues:

Organism=Escherichia coli, GI87082378, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1786755, Length=103, Percent_Identity=30.0970873786408, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11502; Mature: 11371

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWMFLVISGIEEVIAAIAMKYVDGTRKKWPIIVMVLGFGLSFFCLSKAMQMLSAGVAYA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VWTGIGSIGITAVSLFWFKERIRAPQLISLGFIIIGVIGLRLTSS
HHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PWMFLVISGIEEVIAAIAMKYVDGTRKKWPIIVMVLGFGLSFFCLSKAMQMLSAGVAYA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VWTGIGSIGITAVSLFWFKERIRAPQLISLGFIIIGVIGLRLTSS
HHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]