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The map label for this gene is nifU [H]

Identifier: 52785727

GI number: 52785727

Start: 1925876

End: 1926307

Strand: Direct

Name: nifU [H]

Synonym: BLi01970

Alternate gene names: 52785727

Gene position: 1925876-1926307 (Clockwise)

Preceding gene: 52785725

Following gene: 52785728

Centisome position: 45.61

GC content: 45.6

Gene sequence:

>432_bases
ATGCCGACACTGGAAGAGCTGTATCGGTCCGTCATTATGGATCATGCAAGATACAGGCGAAATTTTCGAAAAATCGATAA
ACACGGCGTGTATTACGTCCATTACAAAAATCCAACATGCGGTGATGTGATGACTTTGTTTATCGACATTAAAAATGAAA
AGATCGAAGACGCAGCTTTTATCGGAGATGGGTGCAGCATCAGCATGGCTTCCTCATCAATCATGACTGAACTGATAAAA
GGAAAGACGTTAAAAGAAGCCGGGTTAATGCGTGAAGCGATGGAAAATATGATCAGAAAAGGAGAAGAGCCGGAAGAGGA
TCTGCTGGGAGATGCCGTTTCCCTGATTGGCGTCCATCCGTTGCGGGCCCGTCATAACTGTGCCCTGATGCCTTGGCAGG
CGCTCGATCGGATCAAAGAGAACGTTTATTAA

Upstream 100 bases:

>100_bases
ATTAAATCGTAATTATTATGATTTAATAGCGGAAGTATAACTGAATCCGTTTATTCTTTCAATCAAAATATACTGTTTAA
AAGGAAAGGAGCATGATTTT

Downstream 100 bases:

>100_bases
ATGAACATCACATCTAAAGCACTCCGGTTCTAAAGCCACCGGCAAAGAATATCGGAAGATTCAAGGGAAAAAAGGGGCAG
TAACGAAAGAGGTATGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MPTLEELYRSVIMDHARYRRNFRKIDKHGVYYVHYKNPTCGDVMTLFIDIKNEKIEDAAFIGDGCSISMASSSIMTELIK
GKTLKEAGLMREAMENMIRKGEEPEEDLLGDAVSLIGVHPLRARHNCALMPWQALDRIKENVY

Sequences:

>Translated_143_residues
MPTLEELYRSVIMDHARYRRNFRKIDKHGVYYVHYKNPTCGDVMTLFIDIKNEKIEDAAFIGDGCSISMASSSIMTELIK
GKTLKEAGLMREAMENMIRKGEEPEEDLLGDAVSLIGVHPLRARHNCALMPWQALDRIKENVY
>Mature_142_residues
PTLEELYRSVIMDHARYRRNFRKIDKHGVYYVHYKNPTCGDVMTLFIDIKNEKIEDAAFIGDGCSISMASSSIMTELIKG
KTLKEAGLMREAMENMIRKGEEPEEDLLGDAVSLIGVHPLRARHNCALMPWQALDRIKENVY

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16406; Mature: 16275

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLEELYRSVIMDHARYRRNFRKIDKHGVYYVHYKNPTCGDVMTLFIDIKNEKIEDAAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHEEECCCCCCCHHHE
IGDGCSISMASSSIMTELIKGKTLKEAGLMREAMENMIRKGEEPEEDLLGDAVSLIGVHP
ECCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
LRARHNCALMPWQALDRIKENVY
CCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PTLEELYRSVIMDHARYRRNFRKIDKHGVYYVHYKNPTCGDVMTLFIDIKNEKIEDAAF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHEEECCCCCCCHHHE
IGDGCSISMASSSIMTELIKGKTLKEAGLMREAMENMIRKGEEPEEDLLGDAVSLIGVHP
ECCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
LRARHNCALMPWQALDRIKENVY
CCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]