Click here to switch to the map view.

The map label for this gene is ylpC

Identifier: 52785568

GI number: 52785568

Start: 1767765

End: 1768331

Strand: Direct

Name: ylpC

Synonym: BLi01809

Alternate gene names: 52785568

Gene position: 1767765-1768331 (Clockwise)

Preceding gene: 52785567

Following gene: 52785569

Centisome position: 41.86

GC content: 47.97

Gene sequence:

>567_bases
ATGAGAAAAAGTAAGAGAGAACGCCAAGAATTGCTGCAGCAGACGATTCGTACGACCCCGTTTATTACGGACGAGGAGTT
AGCGGAGAAATTTAACGTCAGCATTCAGACGATTCGCTTGGACCGTTTGGAACTTTCCATACCTGAACTGAGAGAAAGAA
TCAAAAGTGTTGCCGAGAAGTCTCTTGAAGATGAAGTCAAGTCATTGCCGCTTGACGAGGTCATCGGCGAGATCATTGAT
TTGGAGCTGGATGAGCACGCGATTTCAATTCTTGAGATCAGAAGGGAGCATGTTTTCAGCCGAAATCAAATCGCCAGGGG
GCACCATTTGTTTGCCCAGGCCAACTCGCTCGCCGTCGCCCTCATCGACGATGAGCTCGCATTGACGGCCAAAGCGGACA
TCCGCTTTACAAGGCAGGTCAAGCAAGGCGAACGGGTCGTTGCAAAAGCGAAAGTCGTGAAGCTTGATAAAGATAAAGGC
AGAACGGTTGTTGAAGTGAACAGCTATGTTGCCGAAGAGCCTGTGTTTTCAGGCGAATTTGTCATGTATCGTTCAAAACA
ATCATAG

Upstream 100 bases:

>100_bases
AATTTATCGTCGGCGGGTAAAGAAAGATTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCATAATTG
CGCGGATGGTGTTTAATAAC

Downstream 100 bases:

>100_bases
AAGGTGGCGCGTAAGTCATGAAAATTGCTGTAGATGCCATGGGAGGAGACAATGCTCCCAAAGCGGTTATTGAAGGCGTG
ATGAAAGCGGTCGAAGATTT

Product: fatty acid biosynthesis transcriptional regulator

Products: NA

Alternate protein names: Fatty acid and phospholipid biosynthesis regulator

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRKSKRERQELLQQTIRTTPFITDEELAEKFNVSIQTIRLDRLELSIPELRERIKSVAEKSLEDEVKSLPLDEVIGEIID
LELDEHAISILEIRREHVFSRNQIARGHHLFAQANSLAVALIDDELALTAKADIRFTRQVKQGERVVAKAKVVKLDKDKG
RTVVEVNSYVAEEPVFSGEFVMYRSKQS

Sequences:

>Translated_188_residues
MRKSKRERQELLQQTIRTTPFITDEELAEKFNVSIQTIRLDRLELSIPELRERIKSVAEKSLEDEVKSLPLDEVIGEIID
LELDEHAISILEIRREHVFSRNQIARGHHLFAQANSLAVALIDDELALTAKADIRFTRQVKQGERVVAKAKVVKLDKDKG
RTVVEVNSYVAEEPVFSGEFVMYRSKQS
>Mature_188_residues
MRKSKRERQELLQQTIRTTPFITDEELAEKFNVSIQTIRLDRLELSIPELRERIKSVAEKSLEDEVKSLPLDEVIGEIID
LELDEHAISILEIRREHVFSRNQIARGHHLFAQANSLAVALIDDELALTAKADIRFTRQVKQGERVVAKAKVVKLDKDKG
RTVVEVNSYVAEEPVFSGEFVMYRSKQS

Specific function: Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fapR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FAPR_BACLD (Q65JR0)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078982.1
- RefSeq:   YP_091397.1
- ProteinModelPortal:   Q65JR0
- SMR:   Q65JR0
- STRING:   Q65JR0
- EnsemblBacteria:   EBBACT00000057640
- EnsemblBacteria:   EBBACT00000061114
- GeneID:   3030975
- GeneID:   3101646
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01809
- KEGG:   bli:BL02312
- NMPDR:   fig|279010.5.peg.2894
- eggNOG:   COG2050
- GeneTree:   EBGT00050000002335
- HOGENOM:   HBG304763
- OMA:   EHVFSRN
- ProtClustDB:   PRK04424
- BioCyc:   BLIC279010-1:BLI01809-MONOMER
- BioCyc:   BLIC279010:BL02312-MONOMER
- HAMAP:   MF_01814
- InterPro:   IPR013196
- InterPro:   IPR017275
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF037733

Pfam domain/function: PF08279 HTH_11

EC number: NA

Molecular weight: Translated: 21623; Mature: 21623

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSKRERQELLQQTIRTTPFITDEELAEKFNVSIQTIRLDRLELSIPELRERIKSVAEK
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEECHHCCCHHHHHHHHHHHHHH
SLEDEVKSLPLDEVIGEIIDLELDEHAISILEIRREHVFSRNQIARGHHLFAQANSLAVA
HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEEE
LIDDELALTAKADIRFTRQVKQGERVVAKAKVVKLDKDKGRTVVEVNSYVAEEPVFSGEF
EECCCEEEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHHCCCCCCCCE
VMYRSKQS
EEEECCCC
>Mature Secondary Structure
MRKSKRERQELLQQTIRTTPFITDEELAEKFNVSIQTIRLDRLELSIPELRERIKSVAEK
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEECHHCCCHHHHHHHHHHHHHH
SLEDEVKSLPLDEVIGEIIDLELDEHAISILEIRREHVFSRNQIARGHHLFAQANSLAVA
HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEEE
LIDDELALTAKADIRFTRQVKQGERVVAKAKVVKLDKDKGRTVVEVNSYVAEEPVFSGEF
EECCCEEEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHHCCCCCCCCE
VMYRSKQS
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA