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The map label for this gene is ylmH [H]

Identifier: 52785519

GI number: 52785519

Start: 1716936

End: 1717712

Strand: Direct

Name: ylmH [H]

Synonym: BLi01760

Alternate gene names: 52785519

Gene position: 1716936-1717712 (Clockwise)

Preceding gene: 52785518

Following gene: 52785520

Centisome position: 40.66

GC content: 48.39

Gene sequence:

>777_bases
ATGAGCGATATTTACCAGCATTTCAGAAAAGACGAAGAGCCGTTTATCGACCAGGCTCTTGAGTGGAAAAGAATCGTAGC
GGAACAGTACCGGATGAAGCTGACCGATTTTTTGGATCCGCGGGAACAGGTGATCCTGCAGTCTGTCATCGGTCAGTCGG
ACGAAGTGAGGCTTGAATTTTTCGGGGGGTTCCCTGAGGCTGAACGAAAGCGGGCTGTGCTGTTCCCCGAATATGCCGAG
CCGTCTGCCGAAGATTTTCAGCTTCAAGCCTGGGAAGTCATCTACCCGCAAAAATTTGCCTCCATCGAGCATCGCGAGCT
TCTCGGCTCATTGATGGGCATCGGATTGAAGCGCCAAAAGTTCGGCGATCTGATCTTTTCGGACGGAACATGGCAGTTTA
TCTGTTCGGAAGAAGTCGCTGATTTTGTTTTCACCCAGCTGACACAAATCGGCAAGGTGAAAGTTTCCCTTGAAAAAATT
CCGCTTTCAAAGCTTAAAGTACCGGAGCAGGATGTCGAAATAAGGGATGATACGGTTTCATCTTTGAGGCTTGATGCGAT
TTGCTCGGCAATGAGCAGGCAATCCCGGCAGAAAGCACAGGTTCTTGTGAAAAACGGCCTCGTGAAAGTGAACTGGAAAG
TCATCGAAGACCCTTCATATGCACTGGCTGAAGGGGATATGGTTTCGATCCGGGGATTTGGCCGCTTCAGAATGAAAAAC
ATTGACGGCAAAACGAAGAAGGGCAAATGGAGATTGACGTTTGAAAAACAAAAATGA

Upstream 100 bases:

>100_bases
GCGGCAGCGGCGCCGCTTTTCATGAGTGTGCCTTCAATCTTTGCGGGCCGAGTATCGGGCTTGGCTGTAGCCAGGCCTCT
TTACATAGAAAGGAAAGACA

Downstream 100 bases:

>100_bases
CGCGTTTTAACAGTTTTTTCTCCGCCCGGTCGAATTTTGCTTTATAATGTTGACTAGGACAAGTGTACATAAAGAAAAAA
ATGGAGGTGGGCAGCATGCC

Product: YlmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSDIYQHFRKDEEPFIDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIGQSDEVRLEFFGGFPEAERKRAVLFPEYAE
PSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIFSDGTWQFICSEEVADFVFTQLTQIGKVKVSLEKI
PLSKLKVPEQDVEIRDDTVSSLRLDAICSAMSRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKN
IDGKTKKGKWRLTFEKQK

Sequences:

>Translated_258_residues
MSDIYQHFRKDEEPFIDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIGQSDEVRLEFFGGFPEAERKRAVLFPEYAE
PSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIFSDGTWQFICSEEVADFVFTQLTQIGKVKVSLEKI
PLSKLKVPEQDVEIRDDTVSSLRLDAICSAMSRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKN
IDGKTKKGKWRLTFEKQK
>Mature_257_residues
SDIYQHFRKDEEPFIDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIGQSDEVRLEFFGGFPEAERKRAVLFPEYAEP
SAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIFSDGTWQFICSEEVADFVFTQLTQIGKVKVSLEKIP
LSKLKVPEQDVEIRDDTVSSLRLDAICSAMSRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKNI
DGKTKKGKWRLTFEKQK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29923; Mature: 29792

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIYQHFRKDEEPFIDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIGQSDEVRLEF
CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
FGGFPEAERKRAVLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQK
ECCCCCHHCCCEEECCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHHHHHCCCCCHHH
FGDLIFSDGTWQFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVS
HCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHEEEEHHHCCHHHCCCCCCCCCCCCHHHH
SLRLDAICSAMSRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKN
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEECCCCEEEEECCCEEEEEC
IDGKTKKGKWRLTFEKQK
CCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SDIYQHFRKDEEPFIDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIGQSDEVRLEF
CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
FGGFPEAERKRAVLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQK
ECCCCCHHCCCEEECCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHHHHHCCCCCHHH
FGDLIFSDGTWQFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVS
HCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHEEEEHHHCCHHHCCCCCCCCCCCCHHHH
SLRLDAICSAMSRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKN
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEECCCCEEEEECCCEEEEEC
IDGKTKKGKWRLTFEKQK
CCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]