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The map label for this gene is ylaC [H]

Identifier: 52785449

GI number: 52785449

Start: 1646768

End: 1647283

Strand: Direct

Name: ylaC [H]

Synonym: BLi01689

Alternate gene names: 52785449

Gene position: 1646768-1647283 (Clockwise)

Preceding gene: 52785448

Following gene: 52785450

Centisome position: 39.0

GC content: 45.16

Gene sequence:

>516_bases
ATGGCTCACAATAATAAACAGACGATTGAAGAACTGTACAGGGAATATTATCATGACATCATGTACTATTTGTACAGGCG
AACCCATCAGCTTGAGACGGCGAAAGACCTGGCGCAGGATACGTTTCTAAAAGCTTTTGCGGGCCTGGAGTCTTTCAGGG
GCCATTCCTCGATCAAAACATGGCTGTATACGATCGCACATCATACGTTTATCAACTGGTACAGAAAAGATAAAAAAATC
CAATTTTCCGACGTGGCGGCCTGCGGCGATATGGAACAGCACACATTTGAAATGCCTGAGCGCCATTTGGCAAACGCCAT
AATGCAGGAAGAGCTGAAACATCACATTGACCGGCTGAAAGAAGATTACCAGACTGTCCTCATTTTAAGAGAGTTTCAAG
AGCTGTCATACGAGGAAATAGCGGAAGTGCTGAATTGGAAACTGTCAAAGGTAAAAACCAATCTTCACCGGGCCCGCCTG
GAGCTGAAAAAAAGCTTGGAAGGCAGGGAGGTTTAA

Upstream 100 bases:

>100_bases
TGATCATCAGAAGCTCCTTCATATCAAGATTTTTGTTTACTCGTTATATGGTGCTTTCCTGCTCCTATCGATTTGGATGA
CGGTGTGGTTTTTTTTCTAA

Downstream 100 bases:

>100_bases
CAATATGAAATGCCATCTTGTAAGAGATTTACTGCCTTTATACATAGAAGGCGATTGCAGCCGCAAAACGGAACGTTTGG
TTGCCGCACACATTAAGACA

Product: YlaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MAHNNKQTIEELYREYYHDIMYYLYRRTHQLETAKDLAQDTFLKAFAGLESFRGHSSIKTWLYTIAHHTFINWYRKDKKI
QFSDVAACGDMEQHTFEMPERHLANAIMQEELKHHIDRLKEDYQTVLILREFQELSYEEIAEVLNWKLSKVKTNLHRARL
ELKKSLEGREV

Sequences:

>Translated_171_residues
MAHNNKQTIEELYREYYHDIMYYLYRRTHQLETAKDLAQDTFLKAFAGLESFRGHSSIKTWLYTIAHHTFINWYRKDKKI
QFSDVAACGDMEQHTFEMPERHLANAIMQEELKHHIDRLKEDYQTVLILREFQELSYEEIAEVLNWKLSKVKTNLHRARL
ELKKSLEGREV
>Mature_170_residues
AHNNKQTIEELYREYYHDIMYYLYRRTHQLETAKDLAQDTFLKAFAGLESFRGHSSIKTWLYTIAHHTFINWYRKDKKIQ
FSDVAACGDMEQHTFEMPERHLANAIMQEELKHHIDRLKEDYQTVLILREFQELSYEEIAEVLNWKLSKVKTNLHRARLE
LKKSLEGREV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor contributes to oxidative stress resistance [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=162, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20679; Mature: 20548

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHNNKQTIEELYREYYHDIMYYLYRRTHQLETAKDLAQDTFLKAFAGLESFRGHSSIKT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
WLYTIAHHTFINWYRKDKKIQFSDVAACGDMEQHTFEMPERHLANAIMQEELKHHIDRLK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
EDYQTVLILREFQELSYEEIAEVLNWKLSKVKTNLHRARLELKKSLEGREV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AHNNKQTIEELYREYYHDIMYYLYRRTHQLETAKDLAQDTFLKAFAGLESFRGHSSIKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
WLYTIAHHTFINWYRKDKKIQFSDVAACGDMEQHTFEMPERHLANAIMQEELKHHIDRLK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
EDYQTVLILREFQELSYEEIAEVLNWKLSKVKTNLHRARLELKKSLEGREV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]