Click here to switch to the map view.

The map label for this gene is splB [H]

Identifier: 52785365

GI number: 52785365

Start: 1566585

End: 1567637

Strand: Direct

Name: splB [H]

Synonym: BLi01602

Alternate gene names: 52785365

Gene position: 1566585-1567637 (Clockwise)

Preceding gene: 52785364

Following gene: 52785367

Centisome position: 37.1

GC content: 46.82

Gene sequence:

>1053_bases
ATGCAAAGGATGTGTCTGTTTCCAATGGTAAAACCGTTTGTTCCCCAACTCGTCTATATTGAACCGAGAGCCCTGGAATA
TCCGCTTGGAAAAGAGCTGAGGGATAAATTTTCAAACATGGGACTTGAGATCAGGGAAACAACTTCACACAACCAGGTGA
GGAATATCCCGGGGGAAGGCCACCTGCAAAAATACAGAAATGCGAAATCCACTTTGGTGATCGGCGTCAGAAAAACATTG
AAGTTCGATTCGTCAAAACCGTCCGCAGAATACGCGATCCCGTTTGCAACAGGGTGTATGGGTCACTGTCATTACTGCTA
CCTGCAAACGACAATGGGCAGCAAGCCGTATATCAGAACGTACGTCAATGTGGAGGAAATACTTGAGCAGGCGGATCAAT
ATATAAAAGAAAGGGCTCCCGAAGATACGCGGTTTGAAGCTTCCTGCACATCCGATATCGTCGGAATTGACCATTTGACA
CATACGTTAAAACGCGCCATTGAGCATTTCGGTCAAACCGACCATGGTAAGCTGCGTTTCGTGACAAAATTTCATCATGT
CGACCATTTGCTCGATGCCAAGCACAACGGAAAAACGCGCTTCCGCTTCAGCGTGAATGCCGAATATGTCATTAAAAGCT
TTGAACCCGGCACATCCCCGTTGGATAAACGGATCGAAGCCGCCGTGAAAGTAGCGGAAGCGGGCTATCCGCTCGGTTTT
ATCATCGCTCCGATTTATATTCATGACGGCTGGCAGGAAGGCTACAGAGTTCTGCTGGAAAAGCTCGATCGTGCGCTGCC
GCAGCATGCGAGGCGCGACATCACCTTTGAAATGATCCAGCATAGATTCACGAAGCCGGCAAAGAGAGTCATTGAAAAAA
ACTATCCAAAGACAAAGCTCGAACTGGATGAAGAAAAACGGCGCTATAAATGGGGCAGATACGGGATTGGCAAATACATT
TATCAGAAGGATGAAGAAGCAGAGCTTCGCAGCGCCCTTGAATCGTATATCGACAACTATTTTCCCGAAGCAAAAATCGA
ATATTTCACATAA

Upstream 100 bases:

>100_bases
TCATATGAAGAGGCGGAACGGCTTTACCGTGAATTATTTGACGGGATATGAAGACATTACCGGTATATCACATCCTCTAA
ATGCAAAAAGTAATGGAAAT

Downstream 100 bases:

>100_bases
CAGAGCTTTAGTTGATAAAGCTCTGTTTTTTGTTTTGAAAACATTATGTTAAAAAAGGATTTTTCCACTCCATTAACACC
GCATAATCAAGCGATTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MQRMCLFPMVKPFVPQLVYIEPRALEYPLGKELRDKFSNMGLEIRETTSHNQVRNIPGEGHLQKYRNAKSTLVIGVRKTL
KFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRTYVNVEEILEQADQYIKERAPEDTRFEASCTSDIVGIDHLT
HTLKRAIEHFGQTDHGKLRFVTKFHHVDHLLDAKHNGKTRFRFSVNAEYVIKSFEPGTSPLDKRIEAAVKVAEAGYPLGF
IIAPIYIHDGWQEGYRVLLEKLDRALPQHARRDITFEMIQHRFTKPAKRVIEKNYPKTKLELDEEKRRYKWGRYGIGKYI
YQKDEEAELRSALESYIDNYFPEAKIEYFT

Sequences:

>Translated_350_residues
MQRMCLFPMVKPFVPQLVYIEPRALEYPLGKELRDKFSNMGLEIRETTSHNQVRNIPGEGHLQKYRNAKSTLVIGVRKTL
KFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRTYVNVEEILEQADQYIKERAPEDTRFEASCTSDIVGIDHLT
HTLKRAIEHFGQTDHGKLRFVTKFHHVDHLLDAKHNGKTRFRFSVNAEYVIKSFEPGTSPLDKRIEAAVKVAEAGYPLGF
IIAPIYIHDGWQEGYRVLLEKLDRALPQHARRDITFEMIQHRFTKPAKRVIEKNYPKTKLELDEEKRRYKWGRYGIGKYI
YQKDEEAELRSALESYIDNYFPEAKIEYFT
>Mature_350_residues
MQRMCLFPMVKPFVPQLVYIEPRALEYPLGKELRDKFSNMGLEIRETTSHNQVRNIPGEGHLQKYRNAKSTLVIGVRKTL
KFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRTYVNVEEILEQADQYIKERAPEDTRFEASCTSDIVGIDHLT
HTLKRAIEHFGQTDHGKLRFVTKFHHVDHLLDAKHNGKTRFRFSVNAEYVIKSFEPGTSPLDKRIEAAVKVAEAGYPLGF
IIAPIYIHDGWQEGYRVLLEKLDRALPQHARRDITFEMIQHRFTKPAKRVIEKNYPKTKLELDEEKRRYKWGRYGIGKYI
YQKDEEAELRSALESYIDNYFPEAKIEYFT

Specific function: Involved in repair of UV radiation-induced DNA damage during spore germination. Can repair thymine dimer 5-thyminyl-5,6- dihydrothymine (known as spore photoproduct (SP)) by in situ monomerization of SP to two thymines [H]

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. SPL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR004594 [H]

Pfam domain/function: NA

EC number: =4.1.99.14 [H]

Molecular weight: Translated: 40878; Mature: 40878

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRMCLFPMVKPFVPQLVYIEPRALEYPLGKELRDKFSNMGLEIRETTSHNQVRNIPGEG
CCCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEECCCCCHHHCCCCCC
HLQKYRNAKSTLVIGVRKTLKFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRT
HHHHHCCCCCEEEEEEHHHHCCCCCCCCCCEECCHHHCCCCCCEEEEEEECCCCCCCEEE
YVNVEEILEQADQYIKERAPEDTRFEASCTSDIVGIDHLTHTLKRAIEHFGQTDHGKLRF
ECCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
VTKFHHVDHLLDAKHNGKTRFRFSVNAEYVIKSFEPGTSPLDKRIEAAVKVAEAGYPLGF
HHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
IIAPIYIHDGWQEGYRVLLEKLDRALPQHARRDITFEMIQHRFTKPAKRVIEKNYPKTKL
EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHCCCCCCCC
ELDEEKRRYKWGRYGIGKYIYQKDEEAELRSALESYIDNYFPEAKIEYFT
CCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure
MQRMCLFPMVKPFVPQLVYIEPRALEYPLGKELRDKFSNMGLEIRETTSHNQVRNIPGEG
CCCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEECCCCCHHHCCCCCC
HLQKYRNAKSTLVIGVRKTLKFDSSKPSAEYAIPFATGCMGHCHYCYLQTTMGSKPYIRT
HHHHHCCCCCEEEEEEHHHHCCCCCCCCCCEECCHHHCCCCCCEEEEEEECCCCCCCEEE
YVNVEEILEQADQYIKERAPEDTRFEASCTSDIVGIDHLTHTLKRAIEHFGQTDHGKLRF
ECCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
VTKFHHVDHLLDAKHNGKTRFRFSVNAEYVIKSFEPGTSPLDKRIEAAVKVAEAGYPLGF
HHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
IIAPIYIHDGWQEGYRVLLEKLDRALPQHARRDITFEMIQHRFTKPAKRVIEKNYPKTKL
EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHCCCCCCCC
ELDEEKRRYKWGRYGIGKYIYQKDEEAELRSALESYIDNYFPEAKIEYFT
CCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8449881; 9384377; 9353924 [H]