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The map label for this gene is sigI [H]

Identifier: 52785264

GI number: 52785264

Start: 1472705

End: 1473460

Strand: Direct

Name: sigI [H]

Synonym: BLi01499

Alternate gene names: 52785264

Gene position: 1472705-1473460 (Clockwise)

Preceding gene: 52785263

Following gene: 52785265

Centisome position: 34.88

GC content: 39.55

Gene sequence:

>756_bases
GTGAAACCAGTGCTTAGCCTTTTGTTTAAGACAGGAAAAAGGAAACAATCATTAGAAGAGTCTGTAATAAGCATACAAAA
AGGAAATCAGCAGTTGCAAAACGAGCTTATCGATCAATATAAGCCTTTTGTGGCTAAAACGGTTTCATCCGTGTGCAAAC
GATATATAGATGAAAAAGATGATGAATTCAGCATCGGCTTGATTGCATTCAATGAAGCCATTGAAAAATATTCTTCAGAT
AAAGGAAATTCTCTGCTTGCATTTGCAGAGCTGATCATTAAGCGCAAAGTCATTGATTATATCAGAAAAGAAGCGAGAAA
TGCCCAGAACATCAATATGGACATGCAAGAAGGAGAAGAACAGGAATCCTCCCAAAGCATGATTGAAGCGGAGCTTTCCA
TTCATGAATTCAACCGCATGCTCGAACAGGAGCAAAGGCGGGAGGAGATTCTCCATTTTAAAGAAAGGCTTAAAAGTTTT
GGCCTGTCTTTTTCCGATTTGCTGGAGCATTCCCCGAAACATACGGATGCAAGGCAAAACGCCATCAAAGTGGCATATAC
GCTTGTCGAACATGAAGAATTAAAAAAGATCTTGTTTGAAAAGAAGCAGCTTCCCGTCAAACAGCTTGAAAAGCTTGTGG
CTGTCAGCAGAAAAACCGTAGAGAGAAACCGCAAATATATCATCGCTATGGCGATCATTATAACGGGCGATTATGTTTAC
CTTAAAGATTATCTAAAAGGGGTGCTCAATTCATGA

Upstream 100 bases:

>100_bases
CTGTCACAATTGAAAAATTAGAAATGAATACCGCGTTTTCTCCTTTGCGAATCCCTATCAAATTAGCTATCATTAATGAG
TAGTATAGGGAGGAACTGAG

Downstream 100 bases:

>100_bases
GAAGAGGAATTATTGTAGAAAAAAATAAAAAATTCGTCACATTGCTAACCCCTGACGGACAATTTTTAAAAGCAAAGAGC
ACAGAGGAAGATTATGAAAT

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKPVLSLLFKTGKRKQSLEESVISIQKGNQQLQNELIDQYKPFVAKTVSSVCKRYIDEKDDEFSIGLIAFNEAIEKYSSD
KGNSLLAFAELIIKRKVIDYIRKEARNAQNINMDMQEGEEQESSQSMIEAELSIHEFNRMLEQEQRREEILHFKERLKSF
GLSFSDLLEHSPKHTDARQNAIKVAYTLVEHEELKKILFEKKQLPVKQLEKLVAVSRKTVERNRKYIIAMAIIITGDYVY
LKDYLKGVLNS

Sequences:

>Translated_251_residues
MKPVLSLLFKTGKRKQSLEESVISIQKGNQQLQNELIDQYKPFVAKTVSSVCKRYIDEKDDEFSIGLIAFNEAIEKYSSD
KGNSLLAFAELIIKRKVIDYIRKEARNAQNINMDMQEGEEQESSQSMIEAELSIHEFNRMLEQEQRREEILHFKERLKSF
GLSFSDLLEHSPKHTDARQNAIKVAYTLVEHEELKKILFEKKQLPVKQLEKLVAVSRKTVERNRKYIIAMAIIITGDYVY
LKDYLKGVLNS
>Mature_251_residues
MKPVLSLLFKTGKRKQSLEESVISIQKGNQQLQNELIDQYKPFVAKTVSSVCKRYIDEKDDEFSIGLIAFNEAIEKYSSD
KGNSLLAFAELIIKRKVIDYIRKEARNAQNINMDMQEGEEQESSQSMIEAELSIHEFNRMLEQEQRREEILHFKERLKSF
GLSFSDLLEHSPKHTDARQNAIKVAYTLVEHEELKKILFEKKQLPVKQLEKLVAVSRKTVERNRKYIIAMAIIITGDYVY
LKDYLKGVLNS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 29220; Mature: 29220

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVLSLLFKTGKRKQSLEESVISIQKGNQQLQNELIDQYKPFVAKTVSSVCKRYIDEKD
CCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DEFSIGLIAFNEAIEKYSSDKGNSLLAFAELIIKRKVIDYIRKEARNAQNINMDMQEGEE
CCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCH
QESSQSMIEAELSIHEFNRMLEQEQRREEILHFKERLKSFGLSFSDLLEHSPKHTDARQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH
AIKVAYTLVEHEELKKILFEKKQLPVKQLEKLVAVSRKTVERNRKYIIAMAIIITGDYVY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
LKDYLKGVLNS
HHHHHHHHHCC
>Mature Secondary Structure
MKPVLSLLFKTGKRKQSLEESVISIQKGNQQLQNELIDQYKPFVAKTVSSVCKRYIDEKD
CCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DEFSIGLIAFNEAIEKYSSDKGNSLLAFAELIIKRKVIDYIRKEARNAQNINMDMQEGEE
CCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCH
QESSQSMIEAELSIHEFNRMLEQEQRREEILHFKERLKSFGLSFSDLLEHSPKHTDARQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH
AIKVAYTLVEHEELKKILFEKKQLPVKQLEKLVAVSRKTVERNRKYIIAMAIIITGDYVY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
LKDYLKGVLNS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]