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The map label for this gene is ykcA [H]

Identifier: 52785156

GI number: 52785156

Start: 1386230

End: 1387183

Strand: Direct

Name: ykcA [H]

Synonym: BLi01388

Alternate gene names: 52785156

Gene position: 1386230-1387183 (Clockwise)

Preceding gene: 52785154

Following gene: 52785157

Centisome position: 32.83

GC content: 51.26

Gene sequence:

>954_bases
ATGAACGTAAATGGCATTCACCACGTATCTGCTTTAACAGCAAACGCCCAGCATAACCTGGATTTCTATGTCAAAGGGCT
TGGCATGAAACTGATAAAGAAATCGGTCAATCAGGACGATCCGACCATGTACCACTTGTTTTACGGGGATGAAGTCGCGT
CTCCGGGTTCGGATTTGACATTTTTCGAGATTCCGATGCTTGCCCGGAGACGGGAAGGGACGAACTGTATTTCGGCCGTA
TCACTTCGGGTTCCCGGTGAACAAGCACTCGAATTTTGGGAGAAGCGGCTTCATGAGCTCGGCACAGAGATTTGCGGCAT
CGAGACGCGTGCGGGGCGGAGCATTCTCCGCTTTTTAGATCATGAAGGACAGAACATGATGTTTGTAGCTGATGAAAAGG
GAAAAGACCATGGAGTGCCTGTGAAAAACGGCGTCATTCCTGAGGATGCTGCAATCAGGGGGCTCGGCCCGGTCGAACTG
ACTGTCAGGGACGCCGGTCCGACGGCGGCGGTGCTGACCGATATTCTCGGCTTTCATAAAATCGGTGAGGAACAGGCTGA
CGAATCCGGCCAAACGCTTCACATATTTGAATCGGGTGAAGGAGGAGCAGGCACGGAGGTGCATGTGAAACAGTCAGATG
ACGGCAGAAGAGAGCGTCCCGGAAGAGGAAGCGTCCATCATGTCGCTTTCCGCGTCAAAGATGAAGAAGAACTTAAGCAG
TGGCATGAGATAATCAGTGAGAACGGCTTTTCGAATTCAGGGATTGTGGAACGCTATTATTTTAAGGCGCTGTATTTCAG
AGAACCGAACGGCATACTTTTTGAACTGTCGACTGACGGTCCTGGCTTTGCCGTTGATGAATCAATTGATGAGCTCGGCC
AAAGCCTTGCCCTTCCGCCGTATCTCGAGCATCGGCGGAAAGAGATTGAAGCGCGGCTGAAACCGATCCGATAA

Upstream 100 bases:

>100_bases
CCGACCGGGAAGACGGTTTGGTTGACTTTTCAAATCAAATCGCCTATTTTGGAGAAAGAATAAATCTCGAATTCGAGATA
TTTAATTGGGAGATGATAGA

Downstream 100 bases:

>100_bases
AAAAACGAGGTCCCGAAAAGGACCTCGTTTTTTATATAGGCTCTGTTAAACGTAAATGTTGATATTTGATAACTTTCCAT
AATATTGGTATAATCAGATG

Product: YkcA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MNVNGIHHVSALTANAQHNLDFYVKGLGMKLIKKSVNQDDPTMYHLFYGDEVASPGSDLTFFEIPMLARRREGTNCISAV
SLRVPGEQALEFWEKRLHELGTEICGIETRAGRSILRFLDHEGQNMMFVADEKGKDHGVPVKNGVIPEDAAIRGLGPVEL
TVRDAGPTAAVLTDILGFHKIGEEQADESGQTLHIFESGEGGAGTEVHVKQSDDGRRERPGRGSVHHVAFRVKDEEELKQ
WHEIISENGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFAVDESIDELGQSLALPPYLEHRRKEIEARLKPIR

Sequences:

>Translated_317_residues
MNVNGIHHVSALTANAQHNLDFYVKGLGMKLIKKSVNQDDPTMYHLFYGDEVASPGSDLTFFEIPMLARRREGTNCISAV
SLRVPGEQALEFWEKRLHELGTEICGIETRAGRSILRFLDHEGQNMMFVADEKGKDHGVPVKNGVIPEDAAIRGLGPVEL
TVRDAGPTAAVLTDILGFHKIGEEQADESGQTLHIFESGEGGAGTEVHVKQSDDGRRERPGRGSVHHVAFRVKDEEELKQ
WHEIISENGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFAVDESIDELGQSLALPPYLEHRRKEIEARLKPIR
>Mature_317_residues
MNVNGIHHVSALTANAQHNLDFYVKGLGMKLIKKSVNQDDPTMYHLFYGDEVASPGSDLTFFEIPMLARRREGTNCISAV
SLRVPGEQALEFWEKRLHELGTEICGIETRAGRSILRFLDHEGQNMMFVADEKGKDHGVPVKNGVIPEDAAIRGLGPVEL
TVRDAGPTAAVLTDILGFHKIGEEQADESGQTLHIFESGEGGAGTEVHVKQSDDGRRERPGRGSVHHVAFRVKDEEELKQ
WHEIISENGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFAVDESIDELGQSLALPPYLEHRRKEIEARLKPIR

Specific function: Putative ring-cleavage dioxygenase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0346

COG function: function code E; Lactoylglutathione lyase and related lyases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the extradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 35313; Mature: 35313

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNGIHHVSALTANAQHNLDFYVKGLGMKLIKKSVNQDDPTMYHLFYGDEVASPGSDLT
CCCCCEEHHHEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCE
FFEIPMLARRREGTNCISAVSLRVPGEQALEFWEKRLHELGTEICGIETRAGRSILRFLD
EEECCHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HEGQNMMFVADEKGKDHGVPVKNGVIPEDAAIRGLGPVELTVRDAGPTAAVLTDILGFHK
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
IGEEQADESGQTLHIFESGEGGAGTEVHVKQSDDGRRERPGRGSVHHVAFRVKDEEELKQ
HCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHH
WHEIISENGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFAVDESIDELGQSLALPP
HHHHHHCCCCCCCCHHHHEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCH
YLEHRRKEIEARLKPIR
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVNGIHHVSALTANAQHNLDFYVKGLGMKLIKKSVNQDDPTMYHLFYGDEVASPGSDLT
CCCCCEEHHHEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCE
FFEIPMLARRREGTNCISAVSLRVPGEQALEFWEKRLHELGTEICGIETRAGRSILRFLD
EEECCHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HEGQNMMFVADEKGKDHGVPVKNGVIPEDAAIRGLGPVELTVRDAGPTAAVLTDILGFHK
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
IGEEQADESGQTLHIFESGEGGAGTEVHVKQSDDGRRERPGRGSVHHVAFRVKDEEELKQ
HCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHH
WHEIISENGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFAVDESIDELGQSLALPP
HHHHHHCCCCCCCCHHHHEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCH
YLEHRRKEIEARLKPIR
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]