| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is yesS [H]
Identifier: 52785140
GI number: 52785140
Start: 1364506
End: 1366788
Strand: Direct
Name: yesS [H]
Synonym: BLi01372
Alternate gene names: 52785140
Gene position: 1364506-1366788 (Clockwise)
Preceding gene: 52785139
Following gene: 52785141
Centisome position: 32.31
GC content: 48.05
Gene sequence:
>2283_bases ATGAAAAAGCTGCATCAAAGATATGTTTCACGGCGTAAAGGGAGTTTTTTTAAAAAAAGCTTTGTGATGATCCTGCTGAT TGCGTGTATTCCCGGCTTATTGACGGGTGCAGGAGTCTATTTGTTTTCGGCTGCGAAAATTGAAAAAGAGCTCCAACATC TGCACGAGAACCAGGTGAAACGCCAAATCAGCCAAATCGATGACAAGCTGGAAGGGCTTGAGATCATGCTCTCCCAGCTT GCATATGATCCGCGCCTGATGAACGGTCTGGCCGATGCCGATCTGCAAACGGATTTTCAAACGACGTACAAGCTCTCAAA ATCGCTGTTTTTGCTTCAGGATCAAAATCCGCTCATTCACAAGGTTGAACTGTTCATTCAAGGGAAGGAGCCGATTCTCT TAAATCCAGAATACAACGGACTGACCGACCGGAAAATCTTGAAGGCTTATCATTCGCTGCTTGAAGGCGGTCAAAACGTC TATTGGAAAGACATGAGCGGCGCTTCATCCGGAATGGCCCTTGTCCATAAAATTCCGGGAGGCATCTTAGAACCGTTCGG CGCGCTGATTTTGACGCTTGACGAAAGAGAATTGGGCCGGTTGCTTGAGAGCCTTTCGCCGTATTCAAAGGGAACAGCGC TCCTTTTTCATCATAATCAGAAGCCTGTTTCTTGGAGCAATCGCGGCAAAACCAACTTTGAAAGCGCCTTAAAAGAAAGG CTTGAGAAACAAAAAAATCCACAGGGCTCCTTTGTTATGGATTGGAGCGGAGGTGCGTATTCCGTTTCATACGGACGAAT GGACAGATTGAACCAGGAATGGACCTATGTTTCGGCTTCACCGATGTCGGCCATTACGGCTCCGGTGCTGTTTTTATCGA AGCTCATCGCGTCGGTCAGCATCGCCGGGATCGTTCTTGCCTTCATTCTGGCATGGTATGCGTCACACAAAATTTATTCA CCTGTCGCAAGGCTGATCAAGCTCTGCTCCGGAGAGGGAAAGGCGGCCTATTTTCCGGATGAATTTCATTGGCTCGAGAA GCGCTGGGAAGACCTATCTGAGGAAAGCGGCAGACTGAAAAAGGAACTGCCCCATGCTGCAAACGTTTTTTTTCAGCGCC TTCTGAGCGGATACTTTGCAGATGAATCAGAGAGGAATTTGAGAGATCGTCTGAAAAGGTGGGGCTGGGAAGCAAAAGAC AATGTGTTTACCATCATCGATGTCCAGCTGACGGGACTCTACGAAGGAAACGGATCTTTTACAAAAAAGGATGAAAGTCT GGCGGGCTTTCTGTTGGGAAACATTACGCGCGAACTGGCTGGAAGGACATTCAACCATATTTATATGACAGATGTCCGTT CGCTATCGCTTGCGGTGCTGCTGGCGAGCGGCCGGAATACAGCCTTCAAGGAAGAAATCGCCCAATTTGTGCGTGAGCTG ACAGATGTGATCTACAGCATATCCAAACTGCACGTCACAGTGACGGTATCAAAAACCGCTGACAAGTTAAAAGACATTCC CGGCATTTATGAAGAGGTGAAAGAAGGCAGGCATTACAGACAGTTCGAAAACGCCAGCCAGGTGATCGATTTAAGCCGGC GGGAAGACATGCCTCCCGCTGAATCATACTATCCGTTCGCTCTTGAAAAAGAGGTAGTCAGGGCGTTGCGGCTTGAAGAA AGGGATGAAGTCGAAAGAAGGATCAGGCTGTTTATCCGGGAGCTGTCCGAAAAAGGAAAAACGGAAATCCGCATCCAGCC GGGCATGATGCAGCTGTTCGCAAAGATCCAAGAAGAGATCTTTCATTCCGGCCTTCACCCCTATGAATTGTTCAGCCGAA AAAACCTGCTTCAGGAGCTTTCGGAGCTGAGGGAGCCGGAAAGGGCTGTCGGCTGGATGATGGAGCGTTGCATAAGCCCT TATCTTAAAGAGATGGAAGGAAGGAAAAACAGACAGCAAAAACGGCTTGTCGAACAGGTGCTTGAGATGATTCATCAGGA TTATATGAACGATATCTCGCTTGAAAGCTGCGCTGATCGGGCCGGGACGAATTCGTATACCCTGAGCAAAGCTTTCAAAC AAGTAACCGGCATCAATTTTATCGACTATGTTACCCGGCTCAGAATCGAAAAAGCGAAAGAGCTGCTTCTTGAGACGAAT AAAAAAATCCATGACGTTTCTGAAGAGGTCGGCTACAGACACAGCTATTTCAACCGGATTTTCAAGAAGCAGGTCGGCAT TCCGCCGAGCCGCTACAGGCAGATTCATCAGGAATCTTCGTGA
Upstream 100 bases:
>100_bases CCCTGACCTTTTTGGCAGATGTCGTCCGCTCCAAGTCGCGCGCGTTCCAATAGAAATTGAAAAAAGAAACATTCTTTTCA TTGCAGTGGGGGGAAAAGGG
Downstream 100 bases:
>100_bases AAGGGAGAGTGCTATGAAACGAACAGACAAAAAACCGAAAGTGACAGTATATTTGGCCGGGGACTCGACCGTCGCAGACT GTCCCCCGCATGAAGCGCCG
Product: YesS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MKKLHQRYVSRRKGSFFKKSFVMILLIACIPGLLTGAGVYLFSAAKIEKELQHLHENQVKRQISQIDDKLEGLEIMLSQL AYDPRLMNGLADADLQTDFQTTYKLSKSLFLLQDQNPLIHKVELFIQGKEPILLNPEYNGLTDRKILKAYHSLLEGGQNV YWKDMSGASSGMALVHKIPGGILEPFGALILTLDERELGRLLESLSPYSKGTALLFHHNQKPVSWSNRGKTNFESALKER LEKQKNPQGSFVMDWSGGAYSVSYGRMDRLNQEWTYVSASPMSAITAPVLFLSKLIASVSIAGIVLAFILAWYASHKIYS PVARLIKLCSGEGKAAYFPDEFHWLEKRWEDLSEESGRLKKELPHAANVFFQRLLSGYFADESERNLRDRLKRWGWEAKD NVFTIIDVQLTGLYEGNGSFTKKDESLAGFLLGNITRELAGRTFNHIYMTDVRSLSLAVLLASGRNTAFKEEIAQFVREL TDVIYSISKLHVTVTVSKTADKLKDIPGIYEEVKEGRHYRQFENASQVIDLSRREDMPPAESYYPFALEKEVVRALRLEE RDEVERRIRLFIRELSEKGKTEIRIQPGMMQLFAKIQEEIFHSGLHPYELFSRKNLLQELSELREPERAVGWMMERCISP YLKEMEGRKNRQQKRLVEQVLEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETN KKIHDVSEEVGYRHSYFNRIFKKQVGIPPSRYRQIHQESS
Sequences:
>Translated_760_residues MKKLHQRYVSRRKGSFFKKSFVMILLIACIPGLLTGAGVYLFSAAKIEKELQHLHENQVKRQISQIDDKLEGLEIMLSQL AYDPRLMNGLADADLQTDFQTTYKLSKSLFLLQDQNPLIHKVELFIQGKEPILLNPEYNGLTDRKILKAYHSLLEGGQNV YWKDMSGASSGMALVHKIPGGILEPFGALILTLDERELGRLLESLSPYSKGTALLFHHNQKPVSWSNRGKTNFESALKER LEKQKNPQGSFVMDWSGGAYSVSYGRMDRLNQEWTYVSASPMSAITAPVLFLSKLIASVSIAGIVLAFILAWYASHKIYS PVARLIKLCSGEGKAAYFPDEFHWLEKRWEDLSEESGRLKKELPHAANVFFQRLLSGYFADESERNLRDRLKRWGWEAKD NVFTIIDVQLTGLYEGNGSFTKKDESLAGFLLGNITRELAGRTFNHIYMTDVRSLSLAVLLASGRNTAFKEEIAQFVREL TDVIYSISKLHVTVTVSKTADKLKDIPGIYEEVKEGRHYRQFENASQVIDLSRREDMPPAESYYPFALEKEVVRALRLEE RDEVERRIRLFIRELSEKGKTEIRIQPGMMQLFAKIQEEIFHSGLHPYELFSRKNLLQELSELREPERAVGWMMERCISP YLKEMEGRKNRQQKRLVEQVLEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETN KKIHDVSEEVGYRHSYFNRIFKKQVGIPPSRYRQIHQESS >Mature_760_residues MKKLHQRYVSRRKGSFFKKSFVMILLIACIPGLLTGAGVYLFSAAKIEKELQHLHENQVKRQISQIDDKLEGLEIMLSQL AYDPRLMNGLADADLQTDFQTTYKLSKSLFLLQDQNPLIHKVELFIQGKEPILLNPEYNGLTDRKILKAYHSLLEGGQNV YWKDMSGASSGMALVHKIPGGILEPFGALILTLDERELGRLLESLSPYSKGTALLFHHNQKPVSWSNRGKTNFESALKER LEKQKNPQGSFVMDWSGGAYSVSYGRMDRLNQEWTYVSASPMSAITAPVLFLSKLIASVSIAGIVLAFILAWYASHKIYS PVARLIKLCSGEGKAAYFPDEFHWLEKRWEDLSEESGRLKKELPHAANVFFQRLLSGYFADESERNLRDRLKRWGWEAKD NVFTIIDVQLTGLYEGNGSFTKKDESLAGFLLGNITRELAGRTFNHIYMTDVRSLSLAVLLASGRNTAFKEEIAQFVREL TDVIYSISKLHVTVTVSKTADKLKDIPGIYEEVKEGRHYRQFENASQVIDLSRREDMPPAESYYPFALEKEVVRALRLEE RDEVERRIRLFIRELSEKGKTEIRIQPGMMQLFAKIQEEIFHSGLHPYELFSRKNLLQELSELREPERAVGWMMERCISP YLKEMEGRKNRQQKRLVEQVLEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETN KKIHDVSEEVGYRHSYFNRIFKKQVGIPPSRYRQIHQESS
Specific function: Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization [H]
COG id: COG2207
COG function: function code K; AraC-type DNA-binding domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR018060 [H]
Pfam domain/function: PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 87514; Mature: 87514
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLHQRYVSRRKGSFFKKSFVMILLIACIPGLLTGAGVYLFSAAKIEKELQHLHENQVK CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH RQISQIDDKLEGLEIMLSQLAYDPRLMNGLADADLQTDFQTTYKLSKSLFLLQDQNPLIH HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCHHE KVELFIQGKEPILLNPEYNGLTDRKILKAYHSLLEGGQNVYWKDMSGASSGMALVHKIPG EEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCC GILEPFGALILTLDERELGRLLESLSPYSKGTALLFHHNQKPVSWSNRGKTNFESALKER HHHHHHHHHEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH LEKQKNPQGSFVMDWSGGAYSVSYGRMDRLNQEWTYVSASPMSAITAPVLFLSKLIASVS HHHHCCCCCCEEEEECCCEEEECCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH IAGIVLAFILAWYASHKIYSPVARLIKLCSGEGKAAYFPDEFHWLEKRWEDLSEESGRLK HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH KELPHAANVFFQRLLSGYFADESERNLRDRLKRWGWEAKDNVFTIIDVQLTGLYEGNGSF HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCC TKKDESLAGFLLGNITRELAGRTFNHIYMTDVRSLSLAVLLASGRNTAFKEEIAQFVREL CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH TDVIYSISKLHVTVTVSKTADKLKDIPGIYEEVKEGRHYRQFENASQVIDLSRREDMPPA HHHHHHHHHEEEEEEECHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC ESYYPFALEKEVVRALRLEERDEVERRIRLFIRELSEKGKTEIRIQPGMMQLFAKIQEEI CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH FHSGLHPYELFSRKNLLQELSELREPERAVGWMMERCISPYLKEMEGRKNRQQKRLVEQV HHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETN HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC KKIHDVSEEVGYRHSYFNRIFKKQVGIPPSRYRQIHQESS HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC >Mature Secondary Structure MKKLHQRYVSRRKGSFFKKSFVMILLIACIPGLLTGAGVYLFSAAKIEKELQHLHENQVK CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH RQISQIDDKLEGLEIMLSQLAYDPRLMNGLADADLQTDFQTTYKLSKSLFLLQDQNPLIH HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCHHE KVELFIQGKEPILLNPEYNGLTDRKILKAYHSLLEGGQNVYWKDMSGASSGMALVHKIPG EEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCC GILEPFGALILTLDERELGRLLESLSPYSKGTALLFHHNQKPVSWSNRGKTNFESALKER HHHHHHHHHEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH LEKQKNPQGSFVMDWSGGAYSVSYGRMDRLNQEWTYVSASPMSAITAPVLFLSKLIASVS HHHHCCCCCCEEEEECCCEEEECCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH IAGIVLAFILAWYASHKIYSPVARLIKLCSGEGKAAYFPDEFHWLEKRWEDLSEESGRLK HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH KELPHAANVFFQRLLSGYFADESERNLRDRLKRWGWEAKDNVFTIIDVQLTGLYEGNGSF HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCC TKKDESLAGFLLGNITRELAGRTFNHIYMTDVRSLSLAVLLASGRNTAFKEEIAQFVREL CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH TDVIYSISKLHVTVTVSKTADKLKDIPGIYEEVKEGRHYRQFENASQVIDLSRREDMPPA HHHHHHHHHEEEEEEECHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC ESYYPFALEKEVVRALRLEERDEVERRIRLFIRELSEKGKTEIRIQPGMMQLFAKIQEEI CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH FHSGLHPYELFSRKNLLQELSELREPERAVGWMMERCISPYLKEMEGRKNRQQKRLVEQV HHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LEMIHQDYMNDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETN HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC KKIHDVSEEVGYRHSYFNRIFKKQVGIPPSRYRQIHQESS HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]