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The map label for this gene is yocH [H]

Identifier: 52785077

GI number: 52785077

Start: 1310365

End: 1311099

Strand: Direct

Name: yocH [H]

Synonym: BLi01309

Alternate gene names: 52785077

Gene position: 1310365-1311099 (Clockwise)

Preceding gene: 52785075

Following gene: 52785084

Centisome position: 31.03

GC content: 46.26

Gene sequence:

>735_bases
ATGAAGAAGACAATCATGTCCTTGGCTGCAGCCGCGGCTATGTCGGCGACTGCATTCGGAGCGACTGCCTCAGCAAAAGA
AATCGAAGTTCAAAAAGGAGACACGCTCTGGGGGATTTCTCAAAACTACGGAATGAACCTCAAGGACTTAAAAAAATGGA
ATCAGCTTTCATCAGATCTGATTTTTCCAGGTCAAAAGCTGAACATTTCTTCTCAAGAAGAAAAATCTGAAGAAAAGCAG
TACACCGTTCAGCCAGGGGACACGCTCTCAAAAATCGCAAAAGAGTTCGGTGTGACTGTAAGCGATCTTCAAAAACGGAA
CAACCTGAAGTCAGACTTGATTATTGCAGGGCAAACGATTGCAATAAACGGAGAAGCGGCAGCTGCAGCAGCGCCTGTGA
AACAAGAGTCCGCTCCAAAACAAAATGATCAGCCTGTCAACGTACAAAAGGAAATCACAGTGACCGCAACTGCGTATACG
GCAAATGACGGGGGCATTTCAGGCATCACAAAAACGGGAGTCGACCTGAATGCGAACCGCAATGCGAAAGTCATCGCGGT
TGATCCAAGCGTGATTCCGCTCGGCACGAAAGTATATGTGGAAGGCTATGGCGAAGCGACGGCTGAAGACACCGGCGGCG
CCATTAAAGGCCATAAAATAGACGTATTTATTCCAGATAAAAAAGACGCTTTCAATTGGGGCGTCAAAACCGTAAAGGTT
AAAATTTTAAACTGA

Upstream 100 bases:

>100_bases
TGTAACGAAATTCGCATCAATCTGTCATAGCGGTGACATTTTGCTGTGTTACGATTTTCCCTGTTAGTTTCAAAAGGGCT
AACAAGGGAGGATTTAACTT

Downstream 100 bases:

>100_bases
TATAAAAAATGCAGGAGGCGTTAATTGCCTCCTGCATTTTTTTGTCGAACGATGTTTATGCTGCATGCTGTTCCGCGCGT
CTGCTTTTTACAAAAACCGA

Product: hypothetical protein

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKKTIMSLAAAAAMSATAFGATASAKEIEVQKGDTLWGISQNYGMNLKDLKKWNQLSSDLIFPGQKLNISSQEEKSEEKQ
YTVQPGDTLSKIAKEFGVTVSDLQKRNNLKSDLIIAGQTIAINGEAAAAAAPVKQESAPKQNDQPVNVQKEITVTATAYT
ANDGGISGITKTGVDLNANRNAKVIAVDPSVIPLGTKVYVEGYGEATAEDTGGAIKGHKIDVFIPDKKDAFNWGVKTVKV
KILN

Sequences:

>Translated_244_residues
MKKTIMSLAAAAAMSATAFGATASAKEIEVQKGDTLWGISQNYGMNLKDLKKWNQLSSDLIFPGQKLNISSQEEKSEEKQ
YTVQPGDTLSKIAKEFGVTVSDLQKRNNLKSDLIIAGQTIAINGEAAAAAAPVKQESAPKQNDQPVNVQKEITVTATAYT
ANDGGISGITKTGVDLNANRNAKVIAVDPSVIPLGTKVYVEGYGEATAEDTGGAIKGHKIDVFIPDKKDAFNWGVKTVKV
KILN
>Mature_244_residues
MKKTIMSLAAAAAMSATAFGATASAKEIEVQKGDTLWGISQNYGMNLKDLKKWNQLSSDLIFPGQKLNISSQEEKSEEKQ
YTVQPGDTLSKIAKEFGVTVSDLQKRNNLKSDLIIAGQTIAINGEAAAAAAPVKQESAPKQNDQPVNVQKEITVTATAYT
ANDGGISGITKTGVDLNANRNAKVIAVDPSVIPLGTKVYVEGYGEATAEDTGGAIKGHKIDVFIPDKKDAFNWGVKTVKV
KILN

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Escherichia coli, GI1786405, Length=90, Percent_Identity=38.8888888888889, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 25926; Mature: 25926

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIMSLAAAAAMSATAFGATASAKEIEVQKGDTLWGISQNYGMNLKDLKKWNQLSSDL
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCE
IFPGQKLNISSQEEKSEEKQYTVQPGDTLSKIAKEFGVTVSDLQKRNNLKSDLIIAGQTI
ECCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCEE
AINGEAAAAAAPVKQESAPKQNDQPVNVQKEITVTATAYTANDGGISGITKTGVDLNANR
EECCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEECCEEECCCC
NAKVIAVDPSVIPLGTKVYVEGYGEATAEDTGGAIKGHKIDVFIPDKKDAFNWGVKTVKV
CEEEEEECCCEEECCCEEEEEECCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEEE
KILN
EEEC
>Mature Secondary Structure
MKKTIMSLAAAAAMSATAFGATASAKEIEVQKGDTLWGISQNYGMNLKDLKKWNQLSSDL
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCE
IFPGQKLNISSQEEKSEEKQYTVQPGDTLSKIAKEFGVTVSDLQKRNNLKSDLIIAGQTI
ECCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCEE
AINGEAAAAAAPVKQESAPKQNDQPVNVQKEITVTATAYTANDGGISGITKTGVDLNANR
EECCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEECCEEECCCC
NAKVIAVDPSVIPLGTKVYVEGYGEATAEDTGGAIKGHKIDVFIPDKKDAFNWGVKTVKV
CEEEEEECCCEEECCCEEEEEECCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEEE
KILN
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]