| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is yitJ [H]
Identifier: 52784965
GI number: 52784965
Start: 1205712
End: 1207541
Strand: Reverse
Name: yitJ [H]
Synonym: BLi01193
Alternate gene names: 52784965
Gene position: 1207541-1205712 (Counterclockwise)
Preceding gene: 52784966
Following gene: 52784964
Centisome position: 28.6
GC content: 51.97
Gene sequence:
>1830_bases ATGGGTTTTTTGGAGGATATAAAAAACAAAACGTTAATCGCTGACGGCGCAATGGGCACGCTTCTGTATTCCTATGGGAT CGACAGGTGTTTTGAGGAACTGAACATCTCCAAGCCCGAAGAAATAAGACGCGTCCACGAAGCGTATGTACAGGCCGGCG CCGACATTATTCAAACGAACACGTACGGCGCAAACTTCATCAAGCTGTCCAGATACGGACTCGAAGACGAAACAAAACAA ATCAACGAAAAAGCCGTCCGCCTCGCCCGCGCCGCCGCCGGCTCCGCTTATGTTCTCGGTACGCTCGGCGGAATCCGGAC GTTCAACAAAAACTCGTATTCTCTCGAGGACATTAAAAGAAGCTTCCGCGAACAGCTCTACCTTCTGTTAAATGAGCAGC CGGACGGACTTCTGCTCGAAACCTATTACGACTTAGAAGAAGCGCGCGAAGTTTTAAAGATTGCCAGAAAGGAAACGGAG CTGCCGATCATTTTGAATGTCTCGATGCACGAAGAGGGCGTTCTTCAGGACGGCACCCCGCTTGCGGACGGTCTGAAGCA GCTGGCATCACTCGGCGCAGATGTCGTCGGCATCAACTGCCGTCTCGGCCCTTATCATATGATCAGAGCGCTTGAAGAAG TCCCGCTTTTAGAAGATGCCTATCTTTCCGTCTATCCGAACAGCAGCCTCCCGTCCCTTGTCGAAGGCAGGCTTGTTTAT GAGACGGATGATGAATATTTCAGGGAAAGCGCGGAGGAATTCCGCAATCAAGGCGCACGGATCATCGGCGGCTGCTGCGG AACGACGCCGAACCACATCAGAGCGATGGCTGAGGCCGTCAAAGGACTTCCTCCAGTCACCGAAAAACGAGTGAAAATCA GAAAGAAAGCGGCGCTTGCCGTTCAAAACGAAAGGACAGAGCCTGCTCTTGACGATCTGGCAAAGCAGAAACGGTCCATT ATCGTCGAGCTCGATCCTCCAAAACAATTAAACTTTGAGAAATTTTTGCACGCCGCAGAGGAGCTAAAATCAGCCGGAAT CGATGCACTGACATTGGCGGACAACTCCCTTGCCACACCGAGGATCAGCAATGTCGCCTGCGGGGCGCTCTTAAAACAGC GCCTCGATATGAGGTCGCTGATTCATATCACATGCAGAGACCGCAACCTGATCGGCCTGCAGTCCCATTTAATGGGACTC GATACGCTGGGGCTGTCAGACGTGCTGGCGATTACCGGCGATCCGTCGAAAATCGGCGACTTTCCGGGAGCGACTTCCGT CTATGACCTGACATCGTTCGATTTGATCAGCCTGATCAAGCAGTTTAACGAAGGCTTGTCCTATTCGGGTAAACCGCTCG GCAAGAAAACGAATTTCTCAGTGGCGGCCGCCTTCAATCCGAATGTCAGACACATTGACAAAGCGGTGAAACGGCTTGAG AAAAAAATCGCCTGCGGCGCAGACTATTTCATTTCCCAGCCTGTCTATTCCGAGGAGCAGCTCATTAAAATCCACAAGGA AACGCGGCATCTTGAAACACCGATCTATATCGGCGTCATGCCGCTCACCAGCAGCCGCAACGCGGAATTCATCCACAACG AAATCCCCGGCATCAAGCTGTCTGATTCAATCCGCGAAAAGATGGCGCTGGCAGGAAACGACAAACAAAAACAGGCCGAG GAAGGGCTCGCGATCGCTCGCTCTCTGCTTGATGCGGCGTGCGACCTGTTCAACGGCATTTATCTGATCACACCGTTTTT GCGGTCCGATCTAACCGCCGAGCTGACGGCATATATCCATCAGAAAGAAAAGGAGAAGACAAATGTCTAA
Upstream 100 bases:
>100_bases GCCTGCTTGGAAGATAAGAAGACGGACAAATGTCGCTGAAAAGTCTTCTGCTTCCCAGAAGACTTTTTTGTTTTATTAAG AATGATTAAGGGGGAAAACG
Downstream 100 bases:
>100_bases CATCAATGACCAGCTGAAGAAAAAAATCCTCGTCCTTGACGGTGCGATGGGAACGATGATCCAAGACGCCGGTTTGTCCG CCGCAGACTTCGGAGGCGAG
Product: bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
Products: NA
Alternate protein names: Homocysteine S-methyltransferase; S-methylmethionine:homocysteine methyltransferase; 5,10-methylenetetrahydrofolate reductase [H]
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MGFLEDIKNKTLIADGAMGTLLYSYGIDRCFEELNISKPEEIRRVHEAYVQAGADIIQTNTYGANFIKLSRYGLEDETKQ INEKAVRLARAAAGSAYVLGTLGGIRTFNKNSYSLEDIKRSFREQLYLLLNEQPDGLLLETYYDLEEAREVLKIARKETE LPIILNVSMHEEGVLQDGTPLADGLKQLASLGADVVGINCRLGPYHMIRALEEVPLLEDAYLSVYPNSSLPSLVEGRLVY ETDDEYFRESAEEFRNQGARIIGGCCGTTPNHIRAMAEAVKGLPPVTEKRVKIRKKAALAVQNERTEPALDDLAKQKRSI IVELDPPKQLNFEKFLHAAEELKSAGIDALTLADNSLATPRISNVACGALLKQRLDMRSLIHITCRDRNLIGLQSHLMGL DTLGLSDVLAITGDPSKIGDFPGATSVYDLTSFDLISLIKQFNEGLSYSGKPLGKKTNFSVAAAFNPNVRHIDKAVKRLE KKIACGADYFISQPVYSEEQLIKIHKETRHLETPIYIGVMPLTSSRNAEFIHNEIPGIKLSDSIREKMALAGNDKQKQAE EGLAIARSLLDAACDLFNGIYLITPFLRSDLTAELTAYIHQKEKEKTNV
Sequences:
>Translated_609_residues MGFLEDIKNKTLIADGAMGTLLYSYGIDRCFEELNISKPEEIRRVHEAYVQAGADIIQTNTYGANFIKLSRYGLEDETKQ INEKAVRLARAAAGSAYVLGTLGGIRTFNKNSYSLEDIKRSFREQLYLLLNEQPDGLLLETYYDLEEAREVLKIARKETE LPIILNVSMHEEGVLQDGTPLADGLKQLASLGADVVGINCRLGPYHMIRALEEVPLLEDAYLSVYPNSSLPSLVEGRLVY ETDDEYFRESAEEFRNQGARIIGGCCGTTPNHIRAMAEAVKGLPPVTEKRVKIRKKAALAVQNERTEPALDDLAKQKRSI IVELDPPKQLNFEKFLHAAEELKSAGIDALTLADNSLATPRISNVACGALLKQRLDMRSLIHITCRDRNLIGLQSHLMGL DTLGLSDVLAITGDPSKIGDFPGATSVYDLTSFDLISLIKQFNEGLSYSGKPLGKKTNFSVAAAFNPNVRHIDKAVKRLE KKIACGADYFISQPVYSEEQLIKIHKETRHLETPIYIGVMPLTSSRNAEFIHNEIPGIKLSDSIREKMALAGNDKQKQAE EGLAIARSLLDAACDLFNGIYLITPFLRSDLTAELTAYIHQKEKEKTNV >Mature_608_residues GFLEDIKNKTLIADGAMGTLLYSYGIDRCFEELNISKPEEIRRVHEAYVQAGADIIQTNTYGANFIKLSRYGLEDETKQI NEKAVRLARAAAGSAYVLGTLGGIRTFNKNSYSLEDIKRSFREQLYLLLNEQPDGLLLETYYDLEEAREVLKIARKETEL PIILNVSMHEEGVLQDGTPLADGLKQLASLGADVVGINCRLGPYHMIRALEEVPLLEDAYLSVYPNSSLPSLVEGRLVYE TDDEYFRESAEEFRNQGARIIGGCCGTTPNHIRAMAEAVKGLPPVTEKRVKIRKKAALAVQNERTEPALDDLAKQKRSII VELDPPKQLNFEKFLHAAEELKSAGIDALTLADNSLATPRISNVACGALLKQRLDMRSLIHITCRDRNLIGLQSHLMGLD TLGLSDVLAITGDPSKIGDFPGATSVYDLTSFDLISLIKQFNEGLSYSGKPLGKKTNFSVAAAFNPNVRHIDKAVKRLEK KIACGADYFISQPVYSEEQLIKIHKETRHLETPIYIGVMPLTSSRNAEFIHNEIPGIKLSDSIREKMALAGNDKQKQAEE GLAIARSLLDAACDLFNGIYLITPFLRSDLTAELTAYIHQKEKEKTNV
Specific function: Terminal step in the de novo biosynthesis of methionine. [C]
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
Organism=Homo sapiens, GI13162290, Length=321, Percent_Identity=30.2180685358255, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI169790923, Length=327, Percent_Identity=27.217125382263, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI157266337, Length=292, Percent_Identity=29.7945205479452, Blast_Score=97, Evalue=5e-20, Organism=Escherichia coli, GI1790450, Length=322, Percent_Identity=29.5031055900621, Blast_Score=125, Evalue=7e-30, Organism=Escherichia coli, GI1786456, Length=301, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17535405, Length=324, Percent_Identity=29.0123456790123, Blast_Score=121, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6324982, Length=318, Percent_Identity=25.7861635220126, Blast_Score=85, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322966, Length=314, Percent_Identity=26.4331210191083, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: 513 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1320 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003171 - InterPro: IPR003726 [H]
Pfam domain/function: PF02219 MTHFR; PF02574 S-methyl_trans [H]
EC number: =2.1.1.10; =1.5.1.20 [H]
Molecular weight: Translated: 67589; Mature: 67458
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS50970 HCY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFLEDIKNKTLIADGAMGTLLYSYGIDRCFEELNISKPEEIRRVHEAYVQAGADIIQTN CCCHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC TYGANFIKLSRYGLEDETKQINEKAVRLARAAAGSAYVLGTLGGIRTFNKNSYSLEDIKR CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCCCCCHHHHHH SFREQLYLLLNEQPDGLLLETYYDLEEAREVLKIARKETELPIILNVSMHEEGVLQDGTP HHHHHHHHHCCCCCCCEEEHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC LADGLKQLASLGADVVGINCRLGPYHMIRALEEVPLLEDAYLSVYPNSSLPSLVEGRLVY HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCEEEE ETDDEYFRESAEEFRNQGARIIGGCCGTTPNHIRAMAEAVKGLPPVTEKRVKIRKKAALA ECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VQNERTEPALDDLAKQKRSIIVELDPPKQLNFEKFLHAAEELKSAGIDALTLADNSLATP HCCCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC RISNVACGALLKQRLDMRSLIHITCRDRNLIGLQSHLMGLDTLGLSDVLAITGDPSKIGD CHHHHHHHHHHHHHHCHHHEEEEEECCCCEEHHHHHHHHHHHCCCCCEEEECCCCHHCCC FPGATSVYDLTSFDLISLIKQFNEGLSYSGKPLGKKTNFSVAAAFNPNVRHIDKAVKRLE CCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH KKIACGADYFISQPVYSEEQLIKIHKETRHLETPIYIGVMPLTSSRNAEFIHNEIPGIKL HHHHCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCCEE SDSIREKMALAGNDKQKQAEEGLAIARSLLDAACDLFNGIYLITPFLRSDLTAELTAYIH CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECHHHHCCHHHHHHHHHH QKEKEKTNV HHHHHCCCC >Mature Secondary Structure GFLEDIKNKTLIADGAMGTLLYSYGIDRCFEELNISKPEEIRRVHEAYVQAGADIIQTN CCHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC TYGANFIKLSRYGLEDETKQINEKAVRLARAAAGSAYVLGTLGGIRTFNKNSYSLEDIKR CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCCCCCHHHHHH SFREQLYLLLNEQPDGLLLETYYDLEEAREVLKIARKETELPIILNVSMHEEGVLQDGTP HHHHHHHHHCCCCCCCEEEHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC LADGLKQLASLGADVVGINCRLGPYHMIRALEEVPLLEDAYLSVYPNSSLPSLVEGRLVY HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCEEEE ETDDEYFRESAEEFRNQGARIIGGCCGTTPNHIRAMAEAVKGLPPVTEKRVKIRKKAALA ECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VQNERTEPALDDLAKQKRSIIVELDPPKQLNFEKFLHAAEELKSAGIDALTLADNSLATP HCCCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC RISNVACGALLKQRLDMRSLIHITCRDRNLIGLQSHLMGLDTLGLSDVLAITGDPSKIGD CHHHHHHHHHHHHHHCHHHEEEEEECCCCEEHHHHHHHHHHHCCCCCEEEECCCCHHCCC FPGATSVYDLTSFDLISLIKQFNEGLSYSGKPLGKKTNFSVAAAFNPNVRHIDKAVKRLE CCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH KKIACGADYFISQPVYSEEQLIKIHKETRHLETPIYIGVMPLTSSRNAEFIHNEIPGIKL HHHHCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCCEE SDSIREKMALAGNDKQKQAEEGLAIARSLLDAACDLFNGIYLITPFLRSDLTAELTAYIH CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECHHHHCCHHHHHHHHHH QKEKEKTNV HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353932; 9384377 [H]