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The map label for this gene is yhdQ [H]

Identifier: 52784799

GI number: 52784799

Start: 1029627

End: 1030052

Strand: Reverse

Name: yhdQ [H]

Synonym: BLi01027

Alternate gene names: 52784799

Gene position: 1030052-1029627 (Counterclockwise)

Preceding gene: 52784804

Following gene: 52784798

Centisome position: 24.39

GC content: 44.6

Gene sequence:

>426_bases
TTGAGGAGGGATGCAGATGGGGCAGAGAAATATCGCATTGGCGAATTAGCAGCTGCTGCAGGCGTAACAAAACGGACTGT
CGATTATTATACGAATCTCGGGCTGTTAACGCCTGACAGATCATGTTCAAACTACCGTTATTACGATGAAGCCGCTCTCA
AACGGCTGAAGTTTATTATGGACTGCAAGCAGCAGAGATTGGCCCTGTCCGACATTAAAGAAAGGCTGGAAAACCAGTTT
CCCTCTTCAACTGTGAATGATGATGAAATTGGAAGCCTGACAACGGAAATCGATCATGTCAATGACAATATCTCCGTGAT
CATAAACAGATTGAAACGGCTGAATCCCGATGAACGGAAGATTCTGAAAAGCCGTCTTTCTCCTGAAAAAATGACGGTCA
TCCAGTCATTTTTGCTGCTGCTTTAG

Upstream 100 bases:

>100_bases
AATAAAGGTTTTTGCATCAATTTTACGCCTTTTTTTGATCAATTAACTTGTATAAACAGCTTCTAATATATTAAAATGTT
TTATAACTATAACGTGATGG

Downstream 100 bases:

>100_bases
TTAATCTTTTACTAAACAGGAGGTGTTACCTTCATTCTCACGCTAGAGTGAAGGTCCTAATTGGAAATAGTTAATTTGAT
TTTTGTTGCTGTATTAATTG

Product: YhdQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRRDADGAEKYRIGELAAAAGVTKRTVDYYTNLGLLTPDRSCSNYRYYDEAALKRLKFIMDCKQQRLALSDIKERLENQF
PSSTVNDDEIGSLTTEIDHVNDNISVIINRLKRLNPDERKILKSRLSPEKMTVIQSFLLLL

Sequences:

>Translated_141_residues
MRRDADGAEKYRIGELAAAAGVTKRTVDYYTNLGLLTPDRSCSNYRYYDEAALKRLKFIMDCKQQRLALSDIKERLENQF
PSSTVNDDEIGSLTTEIDHVNDNISVIINRLKRLNPDERKILKSRLSPEKMTVIQSFLLLL
>Mature_141_residues
MRRDADGAEKYRIGELAAAAGVTKRTVDYYTNLGLLTPDRSCSNYRYYDEAALKRLKFIMDCKQQRLALSDIKERLENQF
PSSTVNDDEIGSLTTEIDHVNDNISVIINRLKRLNPDERKILKSRLSPEKMTVIQSFLLLL

Specific function: Transcriptional activator of the copZA operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 16213; Mature: 16213

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDADGAEKYRIGELAAAAGVTKRTVDYYTNLGLLTPDRSCSNYRYYDEAALKRLKFIM
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DCKQQRLALSDIKERLENQFPSSTVNDDEIGSLTTEIDHVNDNISVIINRLKRLNPDERK
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
ILKSRLSPEKMTVIQSFLLLL
HHHHHCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MRRDADGAEKYRIGELAAAAGVTKRTVDYYTNLGLLTPDRSCSNYRYYDEAALKRLKFIM
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DCKQQRLALSDIKERLENQFPSSTVNDDEIGSLTTEIDHVNDNISVIINRLKRLNPDERK
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
ILKSRLSPEKMTVIQSFLLLL
HHHHHCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]