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The map label for this gene is ydeL [H]

Identifier: 52784788

GI number: 52784788

Start: 1019975

End: 1021387

Strand: Reverse

Name: ydeL [H]

Synonym: BLi01016

Alternate gene names: 52784788

Gene position: 1021387-1019975 (Counterclockwise)

Preceding gene: 52784790

Following gene: 52784787

Centisome position: 24.19

GC content: 51.17

Gene sequence:

>1413_bases
ATGGATATAACCCCTTTTTTAAACCGCAGCGGCAGCGAGCCGCTTTATCAGCAGCTGTACACGTTTTTCAAACGCAGCAT
TCATTCGGGACACATAAAGCCTGGAACAAAGCTTCCCTCCAAACGAATGCTTTCCAAACACTTAAATGTCAGCCTGACAA
CTGTAGAACACGCGTATGAACAGCTGGCTGCAGAAGGATATTTGCTCAGCAAGCCTAGAAAAGGCTGGTTTGCGGCTGAA
GCGGAAGGAGACTTTGCACAGACTGCGCCTCCTCCCCCTGCCGAAAAAGAACTGGAAGAACATGAGACGGCGGCTAACAT
GATCGATTTTCACCACGGCCACGTAGACCTCGCGTCATTTCCTGTTTCCCAATGGAAAAAAACGCTCGCCAAAACCGTTG
GTGAATCAGGGTACGACCTTTTTCAAAGCGGCCCGCCGGCCGGAGACATTCCGCTGCGGAAAATGATTGCGGTTTACCTC
AGAGAATCGCGCGGCGTGGTCTGTTCCCCCGAGCAAATCATCATCGGAGCCGGCACACCGGTTTTGCTGCAGTTGCTGTG
CCATCTGTTTCCTAAAGGCACAACCGTCGGATTTGAAAATCCCGGATTTCATCGCTCAAAAACAGTCCTGAAAACCGGCG
GCTTCAATGTGGTTCCAATACCGGTTGACGAAAGCGGGATTTCCGTGCAGGATCTTGAACAATATCAGCCGCAGCTCGCA
TACACCACTCCGTCCCACCAGTTTCCGCTCGGAATGATCATGCCGGTCGGCCGCAGGCTGCAGTTGCTTGACTGGGCAGC
AGCGACCGGAGCTTATATCATTGAAGACGATTATGACGGGGAATTCCGCTATGCGGGACAGCCGATTCCTTCCCTGCAAG
GGCTTGACCGGAACGACCGGGTCATCTATTTAGGGACTTTTTCAAAATCGCTGATTCCCTCCCTCAGGATCAGCTATATG
GTTCTCCCCTTTCCGCTCGTCAAAGAAGGGCTTAACATGGCATCCTTATTTAAACAAACGGTTTCCCGCCATGTACAGCA
TGCCATTGCTCTTTTTATGAAAAACGGGGATTATCAAAGGCACTTGAATCGAATGAGAACACTCTACCGAAAAAAGCGAA
AAACGCTCCTTGATGCCATCAAGCGTGAATTTGGCGGTCATGCCGCAGTCAGAGGAGAGAACGCCGGTCTTCACATCATC
CTTGAGGTGAAAAGCGCCCCGAGTGAAGAGTGGCTGACCCAAAAAGCGCTGGAAAAAGGGGTTAAAGTATATCCAGCCTC
AGTCTCGTATATGCCCCCCCCTGATACACACGCGGTCCTCCTCGGGTTTGGCGGACTTTCTGAAAAAAGCATCGCAGACG
GCATCAAAAAGCTGAAGACTGCATGGTTTAACGGCGGACAGTCTCAAGATTGA

Upstream 100 bases:

>100_bases
CTGTTGGTTATGAAACTACTTTAACCCGAAAACTGGGCTTTTTAAAATGACCAGTTTTGATAAAATAAAACATACCAGAT
GAATTGAAAGGGCTGATCGA

Downstream 100 bases:

>100_bases
CCCTGCACAATCGGGCACGGAAAGTCGGATATGGGGATTCTGCTCCTGCTATATTTGTAAACAGAGGAGGTCATCAAATG
GATTTGCTGAAGAACATGAA

Product: YdeL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MDITPFLNRSGSEPLYQQLYTFFKRSIHSGHIKPGTKLPSKRMLSKHLNVSLTTVEHAYEQLAAEGYLLSKPRKGWFAAE
AEGDFAQTAPPPPAEKELEEHETAANMIDFHHGHVDLASFPVSQWKKTLAKTVGESGYDLFQSGPPAGDIPLRKMIAVYL
RESRGVVCSPEQIIIGAGTPVLLQLLCHLFPKGTTVGFENPGFHRSKTVLKTGGFNVVPIPVDESGISVQDLEQYQPQLA
YTTPSHQFPLGMIMPVGRRLQLLDWAAATGAYIIEDDYDGEFRYAGQPIPSLQGLDRNDRVIYLGTFSKSLIPSLRISYM
VLPFPLVKEGLNMASLFKQTVSRHVQHAIALFMKNGDYQRHLNRMRTLYRKKRKTLLDAIKREFGGHAAVRGENAGLHII
LEVKSAPSEEWLTQKALEKGVKVYPASVSYMPPPDTHAVLLGFGGLSEKSIADGIKKLKTAWFNGGQSQD

Sequences:

>Translated_470_residues
MDITPFLNRSGSEPLYQQLYTFFKRSIHSGHIKPGTKLPSKRMLSKHLNVSLTTVEHAYEQLAAEGYLLSKPRKGWFAAE
AEGDFAQTAPPPPAEKELEEHETAANMIDFHHGHVDLASFPVSQWKKTLAKTVGESGYDLFQSGPPAGDIPLRKMIAVYL
RESRGVVCSPEQIIIGAGTPVLLQLLCHLFPKGTTVGFENPGFHRSKTVLKTGGFNVVPIPVDESGISVQDLEQYQPQLA
YTTPSHQFPLGMIMPVGRRLQLLDWAAATGAYIIEDDYDGEFRYAGQPIPSLQGLDRNDRVIYLGTFSKSLIPSLRISYM
VLPFPLVKEGLNMASLFKQTVSRHVQHAIALFMKNGDYQRHLNRMRTLYRKKRKTLLDAIKREFGGHAAVRGENAGLHII
LEVKSAPSEEWLTQKALEKGVKVYPASVSYMPPPDTHAVLLGFGGLSEKSIADGIKKLKTAWFNGGQSQD
>Mature_470_residues
MDITPFLNRSGSEPLYQQLYTFFKRSIHSGHIKPGTKLPSKRMLSKHLNVSLTTVEHAYEQLAAEGYLLSKPRKGWFAAE
AEGDFAQTAPPPPAEKELEEHETAANMIDFHHGHVDLASFPVSQWKKTLAKTVGESGYDLFQSGPPAGDIPLRKMIAVYL
RESRGVVCSPEQIIIGAGTPVLLQLLCHLFPKGTTVGFENPGFHRSKTVLKTGGFNVVPIPVDESGISVQDLEQYQPQLA
YTTPSHQFPLGMIMPVGRRLQLLDWAAATGAYIIEDDYDGEFRYAGQPIPSLQGLDRNDRVIYLGTFSKSLIPSLRISYM
VLPFPLVKEGLNMASLFKQTVSRHVQHAIALFMKNGDYQRHLNRMRTLYRKKRKTLLDAIKREFGGHAAVRGENAGLHII
LEVKSAPSEEWLTQKALEKGVKVYPASVSYMPPPDTHAVLLGFGGLSEKSIADGIKKLKTAWFNGGQSQD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=271, Percent_Identity=23.6162361623616, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33469970, Length=271, Percent_Identity=23.6162361623616, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1790797, Length=440, Percent_Identity=27.9545454545455, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI1787710, Length=429, Percent_Identity=25.6410256410256, Blast_Score=125, Evalue=6e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52190; Mature: 52190

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITPFLNRSGSEPLYQQLYTFFKRSIHSGHIKPGTKLPSKRMLSKHLNVSLTTVEHAYE
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEHHHHHHH
QLAAEGYLLSKPRKGWFAAEAEGDFAQTAPPPPAEKELEEHETAANMIDFHHGHVDLASF
HHHHCCEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHC
PVSQWKKTLAKTVGESGYDLFQSGPPAGDIPLRKMIAVYLRESRGVVCSPEQIIIGAGTP
CHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEECCCH
VLLQLLCHLFPKGTTVGFENPGFHRSKTVLKTGGFNVVPIPVDESGISVQDLEQYQPQLA
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHCCCCEE
YTTPSHQFPLGMIMPVGRRLQLLDWAAATGAYIIEDDYDGEFRYAGQPIPSLQGLDRNDR
ECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGTFSKSLIPSLRISYMVLPFPLVKEGLNMASLFKQTVSRHVQHAIALFMKNGDYQR
EEEEECCCHHHHHHHHHHEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
HLNRMRTLYRKKRKTLLDAIKREFGGHAAVRGENAGLHIILEVKSAPSEEWLTQKALEKG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCC
VKVYPASVSYMPPPDTHAVLLGFGGLSEKSIADGIKKLKTAWFNGGQSQD
CEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDITPFLNRSGSEPLYQQLYTFFKRSIHSGHIKPGTKLPSKRMLSKHLNVSLTTVEHAYE
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEHHHHHHH
QLAAEGYLLSKPRKGWFAAEAEGDFAQTAPPPPAEKELEEHETAANMIDFHHGHVDLASF
HHHHCCEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHC
PVSQWKKTLAKTVGESGYDLFQSGPPAGDIPLRKMIAVYLRESRGVVCSPEQIIIGAGTP
CHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEECCCH
VLLQLLCHLFPKGTTVGFENPGFHRSKTVLKTGGFNVVPIPVDESGISVQDLEQYQPQLA
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHCCCCEE
YTTPSHQFPLGMIMPVGRRLQLLDWAAATGAYIIEDDYDGEFRYAGQPIPSLQGLDRNDR
ECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGTFSKSLIPSLRISYMVLPFPLVKEGLNMASLFKQTVSRHVQHAIALFMKNGDYQR
EEEEECCCHHHHHHHHHHEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
HLNRMRTLYRKKRKTLLDAIKREFGGHAAVRGENAGLHIILEVKSAPSEEWLTQKALEKG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCC
VKVYPASVSYMPPPDTHAVLLGFGGLSEKSIADGIKKLKTAWFNGGQSQD
CEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]