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The map label for this gene is yodB [H]

Identifier: 52784658

GI number: 52784658

Start: 880401

End: 880739

Strand: Reverse

Name: yodB [H]

Synonym: BLi00860

Alternate gene names: 52784658

Gene position: 880739-880401 (Counterclockwise)

Preceding gene: 52784663

Following gene: 52784657

Centisome position: 20.86

GC content: 46.61

Gene sequence:

>339_bases
ATGAGCCTATCATCTTTATGTCCGAAATTTGAAAAAGGAATGAAAATGATAAGTCAGCGCTGGAACGGATTCATCATTCA
CCAGCTTCTTAACGGCCCGCAGCGGTTTTGCCATATAGAATCTTCCCTTCCCATCAGCGGAAGGCTGTTATCCGAAAGAT
TAAAAGAACTCGAACACGAGGGCATCATCCACCGGCATGTGTATCCAGAAACTCCGGTGCGGATCGAATACTCCCTGACT
GAAAAAGGGCAGGCGCTCGAACCGGTCCTTAAAGGAATGGAAAAATGGTCGCAGGAATGGATCGATCTGGACGAAGCCAA
TGAACGGGAAAATCATTAA

Upstream 100 bases:

>100_bases
TAAGTTAGTATATATAAATAACAAACTTACGTCAAGACATTTTATGAGCTTTGCTCATTCATTGATATACCGTTATAATA
GACCTAGAGAGGTGAGGAAC

Downstream 100 bases:

>100_bases
AAAAGGCGTGCATCTCAGGTGCATCGCCTTTTTGTTTTGCTGATTAATTCCGCATATTTTCAAGCTGCCCCCAGCCCCCC
GTCTTTTTAACGCTTGCCTG

Product: YodB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MSLSSLCPKFEKGMKMISQRWNGFIIHQLLNGPQRFCHIESSLPISGRLLSERLKELEHEGIIHRHVYPETPVRIEYSLT
EKGQALEPVLKGMEKWSQEWIDLDEANERENH

Sequences:

>Translated_112_residues
MSLSSLCPKFEKGMKMISQRWNGFIIHQLLNGPQRFCHIESSLPISGRLLSERLKELEHEGIIHRHVYPETPVRIEYSLT
EKGQALEPVLKGMEKWSQEWIDLDEANERENH
>Mature_111_residues
SLSSLCPKFEKGMKMISQRWNGFIIHQLLNGPQRFCHIESSLPISGRLLSERLKELEHEGIIHRHVYPETPVRIEYSLTE
KGQALEPVLKGMEKWSQEWIDLDEANERENH

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13137; Mature: 13006

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSSLCPKFEKGMKMISQRWNGFIIHQLLNGPQRFCHIESSLPISGRLLSERLKELEHE
CCHHHCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHEECCCCCCCCHHHHHHHHHHHHHC
GIIHRHVYPETPVRIEYSLTEKGQALEPVLKGMEKWSQEWIDLDEANERENH
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SLSSLCPKFEKGMKMISQRWNGFIIHQLLNGPQRFCHIESSLPISGRLLSERLKELEHE
CHHHCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHEECCCCCCCCHHHHHHHHHHHHHC
GIIHRHVYPETPVRIEYSLTEKGQALEPVLKGMEKWSQEWIDLDEANERENH
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]