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The map label for this gene is yvkB [H]

Identifier: 52784636

GI number: 52784636

Start: 854923

End: 855498

Strand: Reverse

Name: yvkB [H]

Synonym: BLi00838

Alternate gene names: 52784636

Gene position: 855498-854923 (Counterclockwise)

Preceding gene: 52784642

Following gene: 52784629

Centisome position: 20.26

GC content: 43.92

Gene sequence:

>576_bases
TTGCAAGAGACGAACGAACGGATCATATCTGCTGCTTTAGACTTAATGCAAAAATACGGATTCAAGTCGGTGACAATAAA
GGATATCGCGCTTCATTCAGGCGTCAGCGAGATGACGGTCTACCGCCACTTCAAAACTAAGCTTGGACTTTTGGAAGCGG
CCGTTCAACAATTTTCTTATATACCAGCCTTTCAGCGCGTATTTGAAAACGATATCACTTGGAACCTGGAGAAAGACTTA
ACATTGATTGCAGAATCGTATTTGCTTCATATGGAAAAAAACAAGCCGCTCTACCTTATCGCTGTTCAAGACGGCGGAAG
GATGACTGATCTTTTCGGTTCTCTGTTAAAGCATATGGAGGAGCTCCTTTGTTATTTAACAGACTACTTTCGGACGATGC
AGGACAAAAACCTGATGAAAAAGGGAGATGCAGATTCACAGGCCTTCGCTTTTCTGTCATCTTTATACGGATACTTCTCG
TCTGGCGCATTGGCTGGCGGCCGTTTTCAAAAAGTCGCTAAAGACACTTATATTAAACAGATAACCGCCGCCTTCTGCGG
CGGCTTGCATGTATGA

Upstream 100 bases:

>100_bases
ACTCCTTTTTATCCTTTTTGAAACAGGTTGACATCAATTGAGCGCCTGATTAGACTGATGTTAGTTACTACTAACTATCA
TAAAATGGGGGTAAACACCT

Downstream 100 bases:

>100_bases
TATCATCCTTCAAACTGAAGGATGGATCGTTAATCATTTAGCTCTTCAACATCCTTCAGCTTGATTTCCGTATTTTTTTC
AAAGGAGGTGCTGTATTTAA

Product: YvkB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQETNERIISAALDLMQKYGFKSVTIKDIALHSGVSEMTVYRHFKTKLGLLEAAVQQFSYIPAFQRVFENDITWNLEKDL
TLIAESYLLHMEKNKPLYLIAVQDGGRMTDLFGSLLKHMEELLCYLTDYFRTMQDKNLMKKGDADSQAFAFLSSLYGYFS
SGALAGGRFQKVAKDTYIKQITAAFCGGLHV

Sequences:

>Translated_191_residues
MQETNERIISAALDLMQKYGFKSVTIKDIALHSGVSEMTVYRHFKTKLGLLEAAVQQFSYIPAFQRVFENDITWNLEKDL
TLIAESYLLHMEKNKPLYLIAVQDGGRMTDLFGSLLKHMEELLCYLTDYFRTMQDKNLMKKGDADSQAFAFLSSLYGYFS
SGALAGGRFQKVAKDTYIKQITAAFCGGLHV
>Mature_191_residues
MQETNERIISAALDLMQKYGFKSVTIKDIALHSGVSEMTVYRHFKTKLGLLEAAVQQFSYIPAFQRVFENDITWNLEKDL
TLIAESYLLHMEKNKPLYLIAVQDGGRMTDLFGSLLKHMEELLCYLTDYFRTMQDKNLMKKGDADSQAFAFLSSLYGYFS
SGALAGGRFQKVAKDTYIKQITAAFCGGLHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21683; Mature: 21683

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETNERIISAALDLMQKYGFKSVTIKDIALHSGVSEMTVYRHFKTKLGLLEAAVQQFSY
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAFQRVFENDITWNLEKDLTLIAESYLLHMEKNKPLYLIAVQDGGRMTDLFGSLLKHME
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
ELLCYLTDYFRTMQDKNLMKKGDADSQAFAFLSSLYGYFSSGALAGGRFQKVAKDTYIKQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITAAFCGGLHV
HHHHHHCCCCC
>Mature Secondary Structure
MQETNERIISAALDLMQKYGFKSVTIKDIALHSGVSEMTVYRHFKTKLGLLEAAVQQFSY
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAFQRVFENDITWNLEKDLTLIAESYLLHMEKNKPLYLIAVQDGGRMTDLFGSLLKHME
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
ELLCYLTDYFRTMQDKNLMKKGDADSQAFAFLSSLYGYFSSGALAGGRFQKVAKDTYIKQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITAAFCGGLHV
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]