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The map label for this gene is ydiB [H]

Identifier: 52784418

GI number: 52784418

Start: 618094

End: 618570

Strand: Direct

Name: ydiB [H]

Synonym: BLi00612

Alternate gene names: 52784418

Gene position: 618094-618570 (Clockwise)

Preceding gene: 52784417

Following gene: 52784419

Centisome position: 14.64

GC content: 48.64

Gene sequence:

>477_bases
GTGAAAACGTTAGAGTGGAAAACGACAGAGCCTGAAGAGACAAAAAACATTGCCAGGCTGGCGGCAAAATATGTTCAGCC
CGGTGATGTCATCACATTGGAGGGCGATCTTGGAGCAGGCAAAACGACTTTTACGAAAGGGTTTGCCGAAGGGATCGGCA
TCAAGCGGGTTGTCAGCAGCCCGACTTTTACCATCATCAAAGAATACCGTGACGGCTCTCTTCCGCTGTTTCATATGGAT
GTGTACAGGATGGAAGACGAGACGGAAGATCTCGGATTAGATGAATATTTTGAGGGAGACGGCGTCTGCCTTGTGGAATG
GGCGCATTTGATTGAAGAGCAGCTTCCAAAAGAACGCCTTGAGGTGGTCATTAAGCGGCTTGGTGATGACAAGCGAAAGC
TGACCTTTACACCTAAAGGCAGGCGCTACGAAAATCTTTGCGAGGAGATCAGCAAACATGACGATACTTGCGATTGA

Upstream 100 bases:

>100_bases
AACAAGGACAGGCGGAAGTGTTTTATCATGACGGACAGGACCGCGTTCTTCTCGAAAAAAAAGGATATAACCATTTTAAA
CAAGACAGGTGACAAGTAAA

Downstream 100 bases:

>100_bases
TACATCCAATTTAACGCTCGGAGTGGCATTAATCAAAGACGGAAAAGTGATAGCCGAGCATATATCCCACTTAAAGAAAA
ACCATTCGGTCAGAGCCATG

Product: YdiB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKTLEWKTTEPEETKNIARLAAKYVQPGDVITLEGDLGAGKTTFTKGFAEGIGIKRVVSSPTFTIIKEYRDGSLPLFHMD
VYRMEDETEDLGLDEYFEGDGVCLVEWAHLIEEQLPKERLEVVIKRLGDDKRKLTFTPKGRRYENLCEEISKHDDTCD

Sequences:

>Translated_158_residues
MKTLEWKTTEPEETKNIARLAAKYVQPGDVITLEGDLGAGKTTFTKGFAEGIGIKRVVSSPTFTIIKEYRDGSLPLFHMD
VYRMEDETEDLGLDEYFEGDGVCLVEWAHLIEEQLPKERLEVVIKRLGDDKRKLTFTPKGRRYENLCEEISKHDDTCD
>Mature_158_residues
MKTLEWKTTEPEETKNIARLAAKYVQPGDVITLEGDLGAGKTTFTKGFAEGIGIKRVVSSPTFTIIKEYRDGSLPLFHMD
VYRMEDETEDLGLDEYFEGDGVCLVEWAHLIEEQLPKERLEVVIKRLGDDKRKLTFTPKGRRYENLCEEISKHDDTCD

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=115, Percent_Identity=40, Blast_Score=90, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 18090; Mature: 18090

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLEWKTTEPEETKNIARLAAKYVQPGDVITLEGDLGAGKTTFTKGFAEGIGIKRVVSS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCC
PTFTIIKEYRDGSLPLFHMDVYRMEDETEDLGLDEYFEGDGVCLVEWAHLIEEQLPKERL
CHHEEHHHCCCCCCCEEEHHEECCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHCCHHHH
EVVIKRLGDDKRKLTFTPKGRRYENLCEEISKHDDTCD
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKTLEWKTTEPEETKNIARLAAKYVQPGDVITLEGDLGAGKTTFTKGFAEGIGIKRVVSS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCC
PTFTIIKEYRDGSLPLFHMDVYRMEDETEDLGLDEYFEGDGVCLVEWAHLIEEQLPKERL
CHHEEHHHCCCCCCCEEEHHEECCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHCCHHHH
EVVIKRLGDDKRKLTFTPKGRRYENLCEEISKHDDTCD
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]