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The map label for this gene is lrpC [H]

Identifier: 52784337

GI number: 52784337

Start: 522028

End: 522456

Strand: Direct

Name: lrpC [H]

Synonym: BLi00517

Alternate gene names: 52784337

Gene position: 522028-522456 (Clockwise)

Preceding gene: 52784334

Following gene: 52784338

Centisome position: 12.36

GC content: 46.15

Gene sequence:

>429_bases
ATGAAAATTGATGATCTCGATTTTAAAATCATAGCCGAATTAAAGAAAGACAGCCGTTTATCGATGCGGGAGCTGGGCAG
GAAGATCAGCCTTTCGGCACCGTCTGTGACCGAAAGAGTCAGGCGGCTCGAATCGTTCGGCGTCATAAAAAAATATACGC
TGGACATCGATTACCAAAAGGTCGGTCTTCCCGTTTCCTGCATCATTGAAGCAACGGTGAAAAACGGGGAATACGAGAGG
TTTAAAGCGTATATCGAACGCCTCCCGAACATTGAATTCTGCTACCGGATCGCGGGAGCTGCCTGCTATATGCTGAAAAT
CAATGCAGAGAGCCTGGCGAAGATCGAAGCGTTTATCAATGAAACGTCTCCATATGCCCAAACCGTGACACACGTGATTT
TTTCGGAAATTGAAACAAAGGAATCGTGA

Upstream 100 bases:

>100_bases
ATAATCATATATAAGCAGAAGAGAAATATGAATTTCGAACGAAAGAATTTTCGTGAAAATATTAAAATAATGAAATAGAA
TGGAGGGAATAAAGTTACAT

Downstream 100 bases:

>100_bases
ACATTAGAGATGCATCTGTATCATCTGTTATAATATAAGGATGCATGAACAAGAAAGTGATGTGATGATGGACGTGTCTA
AAACAGTTGTTTTAGCAGAA

Product: LrpC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQKVGLPVSCIIEATVKNGEYER
FKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFINETSPYAQTVTHVIFSEIETKES

Sequences:

>Translated_142_residues
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQKVGLPVSCIIEATVKNGEYER
FKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFINETSPYAQTVTHVIFSEIETKES
>Mature_142_residues
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQKVGLPVSCIIEATVKNGEYER
FKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFINETSPYAQTVTHVIFSEIETKES

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=29.3706293706294, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16265; Mature: 16265

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQK
CCCCCCHHHHHHHHHCCCCCCHHHCCCEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
VGLPVSCIIEATVKNGEYERFKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFIN
HCCCHHHEEEEHHCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEEECHHHHHHHHHHHC
ETSPYAQTVTHVIFSEIETKES
CCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQK
CCCCCCHHHHHHHHHCCCCCCHHHCCCEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
VGLPVSCIIEATVKNGEYERFKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFIN
HCCCHHHEEEEHHCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEEECHHHHHHHHHHHC
ETSPYAQTVTHVIFSEIETKES
CCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]