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The map label for this gene is rcsF [H]

Identifier: 52784311

GI number: 52784311

Start: 497222

End: 497689

Strand: Direct

Name: rcsF [H]

Synonym: BLi00491

Alternate gene names: 52784311

Gene position: 497222-497689 (Clockwise)

Preceding gene: 52784310

Following gene: 52784312

Centisome position: 11.78

GC content: 44.66

Gene sequence:

>468_bases
TTGATAGAAATAAAGCCTGTCGCGTTTGTGGAAAACTTGCGGACTTTCCCGAAGGATGATCATTGGGGCGATGTGATTTC
TGAAATTAAGTTGGCTGAAGGCATCCATCCGGACGCTTTAAAAGGGATCGAAGAATTTTCCCATTTGGACATTATCTTTT
ACTTTCATCAAGTAAAAGAGGAACACATTCAATATAAGGCGAGGCGCCCGAGAAACAATAAAAACTATCCTGAGACAGGC
ATTTTCGCCCAACGGGGAAAAAACAGGCCGAACAGGCTCGGCGCGACCGTTGTCACCCTCCTTGAAAAATCCGGGAGCAA
GCTTGTAGTGAAAGGGTTGGATGCGATTGACGGAACACCTGTAATCGATATCAAACCGGTGATGAAAGAGTTTCTCCCGA
AAGGACAAATCATACAGCCGAAATGGTCGGAAGATTTGATGAAAGTATATTGGCATGCAGCTGATTGA

Upstream 100 bases:

>100_bases
GGTTTTTATTCGGCAAAGGAACCGCCTCAGTAAACGGAAAACCTGCAGTGAAAGCAGAGATCGGAATTTTTATGGAGCAA
AGTGAAAGCGGGGGAGAAGA

Downstream 100 bases:

>100_bases
TAGAAAAAACCTCTCAACACCTTCTGAGAGGTTTTTTCATGCTTATACGATAAAAAAGAAGGATATCAGACCAATCTTGA
AGATCGGAAGTCCCATGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MIEIKPVAFVENLRTFPKDDHWGDVISEIKLAEGIHPDALKGIEEFSHLDIIFYFHQVKEEHIQYKARRPRNNKNYPETG
IFAQRGKNRPNRLGATVVTLLEKSGSKLVVKGLDAIDGTPVIDIKPVMKEFLPKGQIIQPKWSEDLMKVYWHAAD

Sequences:

>Translated_155_residues
MIEIKPVAFVENLRTFPKDDHWGDVISEIKLAEGIHPDALKGIEEFSHLDIIFYFHQVKEEHIQYKARRPRNNKNYPETG
IFAQRGKNRPNRLGATVVTLLEKSGSKLVVKGLDAIDGTPVIDIKPVMKEFLPKGQIIQPKWSEDLMKVYWHAAD
>Mature_155_residues
MIEIKPVAFVENLRTFPKDDHWGDVISEIKLAEGIHPDALKGIEEFSHLDIIFYFHQVKEEHIQYKARRPRNNKNYPETG
IFAQRGKNRPNRLGATVVTLLEKSGSKLVVKGLDAIDGTPVIDIKPVMKEFLPKGQIIQPKWSEDLMKVYWHAAD

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=102, Percent_Identity=38.2352941176471, Blast_Score=78, Evalue=3e-15,
Organism=Escherichia coli, GI1786393, Length=95, Percent_Identity=44.2105263157895, Blast_Score=74, Evalue=3e-15,
Organism=Drosophila melanogaster, GI45552503, Length=106, Percent_Identity=33.0188679245283, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 17801; Mature: 17801

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIKPVAFVENLRTFPKDDHWGDVISEIKLAEGIHPDALKGIEEFSHLDIIFYFHQVKE
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EHIQYKARRPRNNKNYPETGIFAQRGKNRPNRLGATVVTLLEKSGSKLVVKGLDAIDGTP
HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
VIDIKPVMKEFLPKGQIIQPKWSEDLMKVYWHAAD
CEECHHHHHHHCCCCCEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEIKPVAFVENLRTFPKDDHWGDVISEIKLAEGIHPDALKGIEEFSHLDIIFYFHQVKE
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EHIQYKARRPRNNKNYPETGIFAQRGKNRPNRLGATVVTLLEKSGSKLVVKGLDAIDGTP
HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
VIDIKPVMKEFLPKGQIIQPKWSEDLMKVYWHAAD
CEECHHHHHHHCCCCCEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA