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The map label for this gene is ydeE [H]

Identifier: 52784231

GI number: 52784231

Start: 409127

End: 409510

Strand: Direct

Name: ydeE [H]

Synonym: BLi00409

Alternate gene names: 52784231

Gene position: 409127-409510 (Clockwise)

Preceding gene: 52784230

Following gene: 52784233

Centisome position: 9.69

GC content: 46.61

Gene sequence:

>384_bases
GTGGTTGATGCTGCTTTTAAATACGGCTACAGCACACCGGAATCATTATCGGGAGGCCTTCAGCCGCCTTCACGGCATCA
GCCCTTCACAGGCCCGAGAAAAAGGCGGACGCTCAGGGCATTTCCACGTCTATCCTTTCATATTCAAATAAAGGGAGTGG
AGGATATGGATTACAAGATTGTTGAAAAAGAACCGTTTCAGGTGATCGGCAAAGCGTTGGAGGTTACGGTCAAGGATGGT
CAAAACAAAAAGGATATTCCGGCTTTTTGGAACGAATTAAATCACAACGGCTTTACCGATTCTTTAAAACCGCACATCGG
CCCGCTTGGCTTCCTTGGCGTCTGCATGGATTTTAACGATCAACCCGATACGTTCAATTTTTGA

Upstream 100 bases:

>100_bases
TTTCATTATCAGCGGATGATCTACATGCTGACGGGTGTCACCTTTGCCGATTACATTCGGAAAAGAAGGCTGACAGCCGC
CGCGCAGGAGCTGACTGCAA

Downstream 100 bases:

>100_bases
AAAAAATACCGCTTACACGCCTGCCGGCTGTGTCGAAAAAACGATTCCCGCCGCAACTTGGGCCGTCTTTGAGGCCATCG
GCCCCGTCAATCCGGCTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MVDAAFKYGYSTPESLSGGLQPPSRHQPFTGPRKRRTLRAFPRLSFHIQIKGVEDMDYKIVEKEPFQVIGKALEVTVKDG
QNKKDIPAFWNELNHNGFTDSLKPHIGPLGFLGVCMDFNDQPDTFNF

Sequences:

>Translated_127_residues
MVDAAFKYGYSTPESLSGGLQPPSRHQPFTGPRKRRTLRAFPRLSFHIQIKGVEDMDYKIVEKEPFQVIGKALEVTVKDG
QNKKDIPAFWNELNHNGFTDSLKPHIGPLGFLGVCMDFNDQPDTFNF
>Mature_127_residues
MVDAAFKYGYSTPESLSGGLQPPSRHQPFTGPRKRRTLRAFPRLSFHIQIKGVEDMDYKIVEKEPFQVIGKALEVTVKDG
QNKKDIPAFWNELNHNGFTDSLKPHIGPLGFLGVCMDFNDQPDTFNF

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14413; Mature: 14413

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDAAFKYGYSTPESLSGGLQPPSRHQPFTGPRKRRTLRAFPRLSFHIQIKGVEDMDYKI
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEE
VEKEPFQVIGKALEVTVKDGQNKKDIPAFWNELNHNGFTDSLKPHIGPLGFLGVCMDFND
ECCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
QPDTFNF
CCCCCCC
>Mature Secondary Structure
MVDAAFKYGYSTPESLSGGLQPPSRHQPFTGPRKRRTLRAFPRLSFHIQIKGVEDMDYKI
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEE
VEKEPFQVIGKALEVTVKDGQNKKDIPAFWNELNHNGFTDSLKPHIGPLGFLGVCMDFND
ECCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
QPDTFNF
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]