| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is ydaB [H]
Identifier: 52784123
GI number: 52784123
Start: 274662
End: 276233
Strand: Direct
Name: ydaB [H]
Synonym: BLi00300
Alternate gene names: 52784123
Gene position: 274662-276233 (Clockwise)
Preceding gene: 52784121
Following gene: 52784124
Centisome position: 6.5
GC content: 48.54
Gene sequence:
>1572_bases GTGCGTCACATAATCTCACCAGGTTTTGTGAGAAACAATGAAAATTTGGAGATGAAAATTTTGAGTACACTTCAGCAATT AATCAATCATCATATGGAAACGTCAGATGGGTTGGAAGCATTGTCCGGAGGAGATCGAACGTTTACGTTCAAAGCGTATC ACCAACGGGTGAACCAGCTGGCTCATTATCTGCTGGAGGAGGGTGTTCAAAAAGGAGACCACATCGCGGTTTTATGTAAA AATAATCATCATTTTCCCGTCATTTTGCTGGCGTCTCTTAAAATCGGAGCGACAGTCGTGCCGTTAAGCTGGCAGCTGAC ATCGTATGAATTAAAAGGAATCTTGAACAACTGCCGGCCGAAGGTGATGTTTTATGACTTGGAATTTGCCGATATACTAA CGCCGCTCCGCGAACAGCTTCAGTTCTGCCTGATGATTGAAGCGGGTGCGGGAATGAACACGACTGAACAGTTTGAGAGC TTATTTAAAAACAGGCCGCTGAAGGTGGAAGCTGAGCAGGTGACAGAGCATGATTTGGCTTTAATGCTGTTCACCTCGGG CACGACGGGAAACCCGAAAGGCTGCATGGTCAACCACGGCAGTCTGGCCGCATACTTGACAGAGGTGAACGTGAAATCGA AGCAGCTGAAAGGCACGCGCTTTTTAGCGAGCCACCCGCTCTATCATATGAGCTCGCTCAACCATGTTTTTCAGGCGGCT TTTGAAGGAATTGCCCTTTATTTCTTATGGGATCCCGAACCGTTTGAAATCCTGCAGGAGATCGAGAAGAAACGCATTCA TATGATGATGGCGTTTCCTTCCGTCTACACCTACATGCTGGAGGAAATGAAAAGACATCCATTCGACCTGTCATCTGTGA AAATGCTTGTTTCCGGCGGCACCAAGGTGCCGGCGCGGCTGATTAAGGAGTACAATGACCATGGAATCATGATGGTGCAG GGGTACGGCAGCACAGAAGCATGGACGGTCAGCGTATGGCGGCCTGACATGGGCTGGGATAAAGTCACTTCAGCCGGCAA GCCGATTCCGCAAGTCAGCATAAAAATCGAAGACCCTGATACACATGAAGAGCTGCCGACGGGAGAAGTCGGAGAAGTCG TCGTCAAAAGCCCGTATGTTTTTGAAGGGTATTACCAAAATCCTTCCGCCACGCAAAAGGTGCTGAAAGACGGCTGGTTC TATATGGGGGACTCCGGCAAACTCGATGAAGACGGATTTTTATATATTACCGGCCGGTATAAAGACGTCATTGTCTACGG AGGCGACAACATTTATCCGGACCAAGTGGAAGAAATCATCGATCAAGTGCCCGGAGTAGTTGAATCTGCCGTCATCGGCG TCCCGGATGAAATGTACGGCGAGGTTCCGAGGGCGTATGTGGTGAAAAATGAAAGCGCCGGCCTCAAGAAGGAGGACATT ATCGCGTATTGCAAAGAGCGCCTGTCCGACTATAAAATTCCTGAAATCGTCTTTATCGACAGCCTTCCGAAAAACAGGCT CGGCAAAATCGTCAAAAAAGATCTGCGTGAACTGGCAGTCAAAGGGCAGTGA
Upstream 100 bases:
>100_bases AAAATGAGCGGTTTAATTCCTTTTGTTATCAGTTCATAAAGATAATAATTCTATTATGAAATAGTTTTACAATGGATATA TTTTGTTTTAGAATGAATTT
Downstream 100 bases:
>100_bases GCGCAATGATTGACCGAAAGCTTATCCAGCATTGGATAAGCTTTTTTTGCTGATTCCTTGCATCAGCTGCCGTTTTTTGT AACGTTTTCCAGTGCTAAAC
Product: YdaB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MRHIISPGFVRNNENLEMKILSTLQQLINHHMETSDGLEALSGGDRTFTFKAYHQRVNQLAHYLLEEGVQKGDHIAVLCK NNHHFPVILLASLKIGATVVPLSWQLTSYELKGILNNCRPKVMFYDLEFADILTPLREQLQFCLMIEAGAGMNTTEQFES LFKNRPLKVEAEQVTEHDLALMLFTSGTTGNPKGCMVNHGSLAAYLTEVNVKSKQLKGTRFLASHPLYHMSSLNHVFQAA FEGIALYFLWDPEPFEILQEIEKKRIHMMMAFPSVYTYMLEEMKRHPFDLSSVKMLVSGGTKVPARLIKEYNDHGIMMVQ GYGSTEAWTVSVWRPDMGWDKVTSAGKPIPQVSIKIEDPDTHEELPTGEVGEVVVKSPYVFEGYYQNPSATQKVLKDGWF YMGDSGKLDEDGFLYITGRYKDVIVYGGDNIYPDQVEEIIDQVPGVVESAVIGVPDEMYGEVPRAYVVKNESAGLKKEDI IAYCKERLSDYKIPEIVFIDSLPKNRLGKIVKKDLRELAVKGQ
Sequences:
>Translated_523_residues MRHIISPGFVRNNENLEMKILSTLQQLINHHMETSDGLEALSGGDRTFTFKAYHQRVNQLAHYLLEEGVQKGDHIAVLCK NNHHFPVILLASLKIGATVVPLSWQLTSYELKGILNNCRPKVMFYDLEFADILTPLREQLQFCLMIEAGAGMNTTEQFES LFKNRPLKVEAEQVTEHDLALMLFTSGTTGNPKGCMVNHGSLAAYLTEVNVKSKQLKGTRFLASHPLYHMSSLNHVFQAA FEGIALYFLWDPEPFEILQEIEKKRIHMMMAFPSVYTYMLEEMKRHPFDLSSVKMLVSGGTKVPARLIKEYNDHGIMMVQ GYGSTEAWTVSVWRPDMGWDKVTSAGKPIPQVSIKIEDPDTHEELPTGEVGEVVVKSPYVFEGYYQNPSATQKVLKDGWF YMGDSGKLDEDGFLYITGRYKDVIVYGGDNIYPDQVEEIIDQVPGVVESAVIGVPDEMYGEVPRAYVVKNESAGLKKEDI IAYCKERLSDYKIPEIVFIDSLPKNRLGKIVKKDLRELAVKGQ >Mature_523_residues MRHIISPGFVRNNENLEMKILSTLQQLINHHMETSDGLEALSGGDRTFTFKAYHQRVNQLAHYLLEEGVQKGDHIAVLCK NNHHFPVILLASLKIGATVVPLSWQLTSYELKGILNNCRPKVMFYDLEFADILTPLREQLQFCLMIEAGAGMNTTEQFES LFKNRPLKVEAEQVTEHDLALMLFTSGTTGNPKGCMVNHGSLAAYLTEVNVKSKQLKGTRFLASHPLYHMSSLNHVFQAA FEGIALYFLWDPEPFEILQEIEKKRIHMMMAFPSVYTYMLEEMKRHPFDLSSVKMLVSGGTKVPARLIKEYNDHGIMMVQ GYGSTEAWTVSVWRPDMGWDKVTSAGKPIPQVSIKIEDPDTHEELPTGEVGEVVVKSPYVFEGYYQNPSATQKVLKDGWF YMGDSGKLDEDGFLYITGRYKDVIVYGGDNIYPDQVEEIIDQVPGVVESAVIGVPDEMYGEVPRAYVVKNESAGLKKEDI IAYCKERLSDYKIPEIVFIDSLPKNRLGKIVKKDLRELAVKGQ
Specific function: Unknown
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=524, Percent_Identity=26.7175572519084, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI187761345, Length=536, Percent_Identity=25.7462686567164, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI187761343, Length=536, Percent_Identity=25.7462686567164, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI42544132, Length=504, Percent_Identity=28.1746031746032, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI122937307, Length=514, Percent_Identity=25.6809338521401, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI38505220, Length=498, Percent_Identity=25.5020080321285, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI157311624, Length=507, Percent_Identity=25.8382642998028, Blast_Score=126, Evalue=6e-29, Organism=Homo sapiens, GI157311622, Length=507, Percent_Identity=25.8382642998028, Blast_Score=126, Evalue=6e-29, Organism=Homo sapiens, GI58082049, Length=507, Percent_Identity=26.232741617357, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI115511026, Length=505, Percent_Identity=24.3564356435644, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI28416953, Length=529, Percent_Identity=22.4952741020794, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI13375727, Length=566, Percent_Identity=23.321554770318, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI40807491, Length=466, Percent_Identity=23.8197424892704, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI40807357, Length=512, Percent_Identity=22.8515625, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI195947378, Length=442, Percent_Identity=22.6244343891403, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI27477105, Length=479, Percent_Identity=20.4592901878914, Blast_Score=83, Evalue=7e-16, Organism=Homo sapiens, GI8923896, Length=553, Percent_Identity=21.5189873417722, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI145693145, Length=515, Percent_Identity=33.3980582524272, Blast_Score=229, Evalue=2e-61, Organism=Escherichia coli, GI1788107, Length=510, Percent_Identity=31.1764705882353, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI221142682, Length=502, Percent_Identity=27.2908366533865, Blast_Score=162, Evalue=6e-41, Organism=Escherichia coli, GI1786810, Length=517, Percent_Identity=24.9516441005803, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1786529, Length=541, Percent_Identity=24.3992606284658, Blast_Score=109, Evalue=4e-25, Organism=Escherichia coli, GI1790505, Length=553, Percent_Identity=22.7848101265823, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788595, Length=492, Percent_Identity=25.2032520325203, Blast_Score=106, Evalue=5e-24, Organism=Escherichia coli, GI1789201, Length=476, Percent_Identity=23.109243697479, Blast_Score=93, Evalue=5e-20, Organism=Caenorhabditis elegans, GI32563687, Length=488, Percent_Identity=29.5081967213115, Blast_Score=198, Evalue=5e-51, Organism=Caenorhabditis elegans, GI17559526, Length=509, Percent_Identity=28.8801571709234, Blast_Score=188, Evalue=7e-48, Organism=Caenorhabditis elegans, GI17558820, Length=484, Percent_Identity=28.5123966942149, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17538037, Length=497, Percent_Identity=27.364185110664, Blast_Score=164, Evalue=8e-41, Organism=Caenorhabditis elegans, GI17557194, Length=502, Percent_Identity=27.2908366533865, Blast_Score=164, Evalue=1e-40, Organism=Caenorhabditis elegans, GI71996755, Length=493, Percent_Identity=27.9918864097363, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71994703, Length=520, Percent_Identity=25.5769230769231, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI71994694, Length=520, Percent_Identity=25.5769230769231, Blast_Score=149, Evalue=4e-36, Organism=Caenorhabditis elegans, GI71994690, Length=520, Percent_Identity=25.5769230769231, Blast_Score=148, Evalue=5e-36, Organism=Caenorhabditis elegans, GI17560308, Length=523, Percent_Identity=25.6214149139579, Blast_Score=144, Evalue=8e-35, Organism=Caenorhabditis elegans, GI71985884, Length=378, Percent_Identity=26.1904761904762, Blast_Score=139, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17531443, Length=492, Percent_Identity=24.1869918699187, Blast_Score=138, Evalue=7e-33, Organism=Caenorhabditis elegans, GI17560140, Length=488, Percent_Identity=24.5901639344262, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25141359, Length=490, Percent_Identity=22.8571428571429, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17510401, Length=491, Percent_Identity=22.8105906313646, Blast_Score=95, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17564090, Length=432, Percent_Identity=21.2962962962963, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI115534440, Length=527, Percent_Identity=23.719165085389, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71982997, Length=541, Percent_Identity=22.735674676525, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71983001, Length=541, Percent_Identity=22.9205175600739, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17556552, Length=541, Percent_Identity=22.550831792976, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6319699, Length=362, Percent_Identity=29.5580110497238, Blast_Score=142, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6319264, Length=591, Percent_Identity=24.3654822335025, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6323182, Length=551, Percent_Identity=24.5009074410163, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI21355181, Length=504, Percent_Identity=28.968253968254, Blast_Score=202, Evalue=7e-52, Organism=Drosophila melanogaster, GI24581924, Length=510, Percent_Identity=26.8627450980392, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI18859661, Length=496, Percent_Identity=26.8145161290323, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI21356947, Length=509, Percent_Identity=27.1119842829077, Blast_Score=158, Evalue=1e-38, Organism=Drosophila melanogaster, GI24656500, Length=484, Percent_Identity=25.2066115702479, Blast_Score=148, Evalue=1e-35, Organism=Drosophila melanogaster, GI19922652, Length=486, Percent_Identity=27.1604938271605, Blast_Score=146, Evalue=4e-35, Organism=Drosophila melanogaster, GI24653035, Length=494, Percent_Identity=26.3157894736842, Blast_Score=144, Evalue=2e-34, Organism=Drosophila melanogaster, GI24648260, Length=482, Percent_Identity=27.1784232365145, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI21358303, Length=514, Percent_Identity=26.2645914396887, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI20130357, Length=480, Percent_Identity=24.7916666666667, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI161076582, Length=498, Percent_Identity=25.7028112449799, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI21356441, Length=447, Percent_Identity=25.503355704698, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI281365686, Length=460, Percent_Identity=23.9130434782609, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24648255, Length=476, Percent_Identity=25, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24648253, Length=477, Percent_Identity=24.9475890985325, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI24648257, Length=486, Percent_Identity=24.2798353909465, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI19921316, Length=495, Percent_Identity=23.6363636363636, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI62472339, Length=540, Percent_Identity=20.7407407407407, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24667955, Length=540, Percent_Identity=20.7407407407407, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24667959, Length=379, Percent_Identity=23.7467018469657, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355225, Length=538, Percent_Identity=20.2602230483271, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: NA
Molecular weight: Translated: 59158; Mature: 59158
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHIISPGFVRNNENLEMKILSTLQQLINHHMETSDGLEALSGGDRTFTFKAYHQRVNQL CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEHHHHHHHHHH AHYLLEEGVQKGDHIAVLCKNNHHFPVILLASLKIGATVVPLSWQLTSYELKGILNNCRP HHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHCCCC KVMFYDLEFADILTPLREQLQFCLMIEAGAGMNTTEQFESLFKNRPLKVEAEQVTEHDLA EEEEEECCHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCCCEEEHHHHCCCCEE LMLFTSGTTGNPKGCMVNHGSLAAYLTEVNVKSKQLKGTRFLASHPLYHMSSLNHVFQAA EEEEECCCCCCCCCEEEECCCCEEEEEECCCCHHHCCCCEEHHCCCCHHHHHHHHHHHHH FEGIALYFLWDPEPFEILQEIEKKRIHMMMAFPSVYTYMLEEMKRHPFDLSSVKMLVSGG HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC TKVPARLIKEYNDHGIMMVQGYGSTEAWTVSVWRPDMGWDKVTSAGKPIPQVSIKIEDPD CCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHCCCCCCCEEEEEECCCC THEELPTGEVGEVVVKSPYVFEGYYQNPSATQKVLKDGWFYMGDSGKLDEDGFLYITGRY CCCCCCCCCCCCEEECCCEEEECCCCCCHHHHHHHHCCCEEECCCCCCCCCCEEEEEECE KDVIVYGGDNIYPDQVEEIIDQVPGVVESAVIGVPDEMYGEVPRAYVVKNESAGLKKEDI EEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHH IAYCKERLSDYKIPEIVFIDSLPKNRLGKIVKKDLRELAVKGQ HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRHIISPGFVRNNENLEMKILSTLQQLINHHMETSDGLEALSGGDRTFTFKAYHQRVNQL CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEHHHHHHHHHH AHYLLEEGVQKGDHIAVLCKNNHHFPVILLASLKIGATVVPLSWQLTSYELKGILNNCRP HHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHCCCC KVMFYDLEFADILTPLREQLQFCLMIEAGAGMNTTEQFESLFKNRPLKVEAEQVTEHDLA EEEEEECCHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCCCEEEHHHHCCCCEE LMLFTSGTTGNPKGCMVNHGSLAAYLTEVNVKSKQLKGTRFLASHPLYHMSSLNHVFQAA EEEEECCCCCCCCCEEEECCCCEEEEEECCCCHHHCCCCEEHHCCCCHHHHHHHHHHHHH FEGIALYFLWDPEPFEILQEIEKKRIHMMMAFPSVYTYMLEEMKRHPFDLSSVKMLVSGG HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC TKVPARLIKEYNDHGIMMVQGYGSTEAWTVSVWRPDMGWDKVTSAGKPIPQVSIKIEDPD CCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHCCCCCCCEEEEEECCCC THEELPTGEVGEVVVKSPYVFEGYYQNPSATQKVLKDGWFYMGDSGKLDEDGFLYITGRY CCCCCCCCCCCCEEECCCEEEECCCCCCHHHHHHHHCCCEEECCCCCCCCCCEEEEEECE KDVIVYGGDNIYPDQVEEIIDQVPGVVESAVIGVPDEMYGEVPRAYVVKNESAGLKKEDI EEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHH IAYCKERLSDYKIPEIVFIDSLPKNRLGKIVKKDLRELAVKGQ HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]