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The map label for this gene is ycbC [C]

Identifier: 52784107

GI number: 52784107

Start: 258271

End: 259197

Strand: Direct

Name: ycbC [C]

Synonym: BLi00284

Alternate gene names: 52784107

Gene position: 258271-259197 (Clockwise)

Preceding gene: 52784106

Following gene: 52784108

Centisome position: 6.12

GC content: 49.19

Gene sequence:

>927_bases
ATGAGTCAATTACGGAAGGCGCCGGAAGGCATATTGGGTTTTCCGGTGGCGCCCTTCAACAGGGAAGGAAAACTGGAGGA
AGAAGCACTTTACGAAAACATCCGCTTTTTATTGGATGAAGGGCTTGAGGCGGTTTTTATCGCTTGCGGCTCAGGAGAGT
TTCAATCTCTCAGCACAAAGGAATATGAGCAAATGGTCGAAATCGCCGTTTCGGCTGCGGACGGGAAGGTGCCTGTTTAC
ACAGGAGTGGGCGGCAACTTAAGCACCGCTTTGGAATGGGCGCGGATTTCCGAGGAAAAAGGGGCCGACGGCTATCTGAT
TCTCCCGCCGTACTTGATACACGGAGAGCAGGAAGGCCTCTATCAATACACGAAAACAATCATTGAAAGCACGGATTTAA
ACGCAATCATTTATCAGCGAGACAATGCGGTTTTGACGCTTGAACAGATTCAGCGGCTGACCGATCTCGAGCAGCTTGTC
GGACTTAAAGACGGCATAGGGGATATGGCGTTGAATATCAGTTTGTCATATACGATAGGTGACAGGCTGGGCTGGCTCAA
CGGAATGCCGATGGCTGAAGTCACGATGCCGGCCTATGCTCCGATTGGCTTTACATCATATTCTTCGGCGATATCCAATT
ATATTCCCCATATTTCCAGAATGTTTTACGAGGCATTATTAAACGGCAATGACCGGCTTGTCAAAGAGATTTATGAGCAA
GTCATCATACCGATCAACGAGATCCGCAAACTTCGGAAAGGCTATGCCGTGTCCTTGATCAAAGCCGGCATGGAAATCAT
GGGGCTTCATGTGAAAAACACGGCGAGACCGCCGATCGTTCCGGTGGAAAAAGAACATTGCCGGCAGCTCGAAAACATTC
TGAAAAACGCGATGGCGCGTTATCCGAAAACGACCGCTGCCCTATAA

Upstream 100 bases:

>100_bases
AACAAAAAGATGAATGGAGGGATTTACTAAAACAGAGACATCGTATTTCAACAGAATGACAACGCTTTCTCAGAAAATGA
ACGACAGGGGGATGACGGAG

Downstream 100 bases:

>100_bases
ACAAAAAGGAGGAACTTGAAGATGTCTGTTGCAGCTGAAAGTAAAACGTATTTCAACTTTATCAACGGCCGCTGGGTGAA
GGCTGAATCGGGCGGGATGG

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSQLRKAPEGILGFPVAPFNREGKLEEEALYENIRFLLDEGLEAVFIACGSGEFQSLSTKEYEQMVEIAVSAADGKVPVY
TGVGGNLSTALEWARISEEKGADGYLILPPYLIHGEQEGLYQYTKTIIESTDLNAIIYQRDNAVLTLEQIQRLTDLEQLV
GLKDGIGDMALNISLSYTIGDRLGWLNGMPMAEVTMPAYAPIGFTSYSSAISNYIPHISRMFYEALLNGNDRLVKEIYEQ
VIIPINEIRKLRKGYAVSLIKAGMEIMGLHVKNTARPPIVPVEKEHCRQLENILKNAMARYPKTTAAL

Sequences:

>Translated_308_residues
MSQLRKAPEGILGFPVAPFNREGKLEEEALYENIRFLLDEGLEAVFIACGSGEFQSLSTKEYEQMVEIAVSAADGKVPVY
TGVGGNLSTALEWARISEEKGADGYLILPPYLIHGEQEGLYQYTKTIIESTDLNAIIYQRDNAVLTLEQIQRLTDLEQLV
GLKDGIGDMALNISLSYTIGDRLGWLNGMPMAEVTMPAYAPIGFTSYSSAISNYIPHISRMFYEALLNGNDRLVKEIYEQ
VIIPINEIRKLRKGYAVSLIKAGMEIMGLHVKNTARPPIVPVEKEHCRQLENILKNAMARYPKTTAAL
>Mature_307_residues
SQLRKAPEGILGFPVAPFNREGKLEEEALYENIRFLLDEGLEAVFIACGSGEFQSLSTKEYEQMVEIAVSAADGKVPVYT
GVGGNLSTALEWARISEEKGADGYLILPPYLIHGEQEGLYQYTKTIIESTDLNAIIYQRDNAVLTLEQIQRLTDLEQLVG
LKDGIGDMALNISLSYTIGDRLGWLNGMPMAEVTMPAYAPIGFTSYSSAISNYIPHISRMFYEALLNGNDRLVKEIYEQV
IIPINEIRKLRKGYAVSLIKAGMEIMGLHVKNTARPPIVPVEKEHCRQLENILKNAMARYPKTTAAL

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family

Homologues:

Organism=Escherichia coli, GI87082415, Length=305, Percent_Identity=27.8688524590164, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788823, Length=292, Percent_Identity=24.3150684931507, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786463, Length=271, Percent_Identity=23.9852398523985, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGD_BACLD (Q65NX1)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_077529.2
- RefSeq:   YP_089936.1
- ProteinModelPortal:   Q65NX1
- SMR:   Q65NX1
- STRING:   Q65NX1
- EnsemblBacteria:   EBBACT00000054971
- EnsemblBacteria:   EBBACT00000058981
- GeneID:   3028847
- GeneID:   3101244
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00284
- KEGG:   bli:BL01645
- NMPDR:   fig|279010.5.peg.1951
- eggNOG:   COG0329
- GeneTree:   EBGT00050000000637
- HOGENOM:   HBG358848
- ProtClustDB:   PRK03620
- BioCyc:   BLIC279010-1:BLI00284-MONOMER
- HAMAP:   MF_00694
- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR12128
- TIGRFAMs:   TIGR03249

Pfam domain/function: PF00701 DHDPS

EC number: =4.2.1.41

Molecular weight: Translated: 34252; Mature: 34121

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLRKAPEGILGFPVAPFNREGKLEEEALYENIRFLLDEGLEAVFIACGSGEFQSLSTK
CCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH
EYEQMVEIAVSAADGKVPVYTGVGGNLSTALEWARISEEKGADGYLILPPYLIHGEQEGL
HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCHH
YQYTKTIIESTDLNAIIYQRDNAVLTLEQIQRLTDLEQLVGLKDGIGDMALNISLSYTIG
HHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEC
DRLGWLNGMPMAEVTMPAYAPIGFTSYSSAISNYIPHISRMFYEALLNGNDRLVKEIYEQ
CHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VIIPINEIRKLRKGYAVSLIKAGMEIMGLHVKNTARPPIVPVEKEHCRQLENILKNAMAR
HCCCHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YPKTTAAL
CCCHHCCC
>Mature Secondary Structure 
SQLRKAPEGILGFPVAPFNREGKLEEEALYENIRFLLDEGLEAVFIACGSGEFQSLSTK
CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH
EYEQMVEIAVSAADGKVPVYTGVGGNLSTALEWARISEEKGADGYLILPPYLIHGEQEGL
HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCHH
YQYTKTIIESTDLNAIIYQRDNAVLTLEQIQRLTDLEQLVGLKDGIGDMALNISLSYTIG
HHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEC
DRLGWLNGMPMAEVTMPAYAPIGFTSYSSAISNYIPHISRMFYEALLNGNDRLVKEIYEQ
CHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VIIPINEIRKLRKGYAVSLIKAGMEIMGLHVKNTARPPIVPVEKEHCRQLENILKNAMAR
HCCCHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YPKTTAAL
CCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA