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The map label for this gene is yrkA1 [H]

Identifier: 52784064

GI number: 52784064

Start: 216134

End: 216445

Strand: Direct

Name: yrkA1 [H]

Synonym: BLi00238

Alternate gene names: 52784064

Gene position: 216134-216445 (Clockwise)

Preceding gene: 52784063

Following gene: 52784065

Centisome position: 5.12

GC content: 41.03

Gene sequence:

>312_bases
TTGACAGCCATTAATTTAATTATTTTTGCGGTATTGATTGCTTTAACGGCGTTTTTTGTTGCAACGGAATTTGCGATCGT
AAAAGTGCGGGCAACTAAAATTGACCGGCTTATACTTGAAGGGAAAAAAGGAGCGGTATCCGCCAAAAAAGTAGTTACCC
ATTTAGATGAATATTTATCGGCTTGCCAACTGGGCATAACCGTTACAGCGCTGGGTATTGGATGGGTTGGAGAGTCGACA
TTCGAAGTGATCCTTCATCCGATCTTTGCTTATTTCAATGTGAGCGAGCAAGTCACACATATCTTAATCTGA

Upstream 100 bases:

>100_bases
CTCAATAGATACGAGTACAGGCTTGTTCTCGCGTTTAGCTTTATCAAATGCTTCTTCTTTTATGGGAGGTGTAAGTCTTA
CTTTAAAGTAAGACGACTTA

Downstream 100 bases:

>100_bases
AAAAAAGGATTGAATAAACATTAAGTAATCAACAAAAGAAGTTGAATCAAAGACAAACTTTCCTGTGATATTTTCTTGTT
GATCTCTTCGCCTCTCTTTA

Product: YrkA1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MTAINLIIFAVLIALTAFFVATEFAIVKVRATKIDRLILEGKKGAVSAKKVVTHLDEYLSACQLGITVTALGIGWVGEST
FEVILHPIFAYFNVSEQVTHILI

Sequences:

>Translated_103_residues
MTAINLIIFAVLIALTAFFVATEFAIVKVRATKIDRLILEGKKGAVSAKKVVTHLDEYLSACQLGITVTALGIGWVGEST
FEVILHPIFAYFNVSEQVTHILI
>Mature_102_residues
TAINLIIFAVLIALTAFFVATEFAIVKVRATKIDRLILEGKKGAVSAKKVVTHLDEYLSACQLGITVTALGIGWVGESTF
EVILHPIFAYFNVSEQVTHILI

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=93, Percent_Identity=53.763440860215, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 11234; Mature: 11102

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAINLIIFAVLIALTAFFVATEFAIVKVRATKIDRLILEGKKGAVSAKKVVTHLDEYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ACQLGITVTALGIGWVGESTFEVILHPIFAYFNVSEQVTHILI
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure 
TAINLIIFAVLIALTAFFVATEFAIVKVRATKIDRLILEGKKGAVSAKKVVTHLDEYLS
HHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ACQLGITVTALGIGWVGESTFEVILHPIFAYFNVSEQVTHILI
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 8969508; 7608059 [H]