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The map label for this gene is ysfB [H]

Identifier: 52783870

GI number: 52783870

Start: 24652

End: 25770

Strand: Reverse

Name: ysfB [H]

Synonym: BLi00020

Alternate gene names: 52783870

Gene position: 25770-24652 (Counterclockwise)

Preceding gene: 52783871

Following gene: 52783869

Centisome position: 0.61

GC content: 44.95

Gene sequence:

>1119_bases
ATGAATTACCTATCAAAAGAATTGGCGGAGGAAATTGTCGAAAGAACCATGTCGATTATTCGGCACAACATTAATATGAT
GGATGAAAACGGGGTTATCATCGCTTCAGGAGACCGTTCGAGAATCGGTGATGAACACGCAGGAGCGAAGGACGCACTTG
CAGCTGAAAAGGTTATCAGCATCACGCCCGAAGAATGCTCGGCTTTAACGGGAACGAAGCCCGGCGTAAACCTTCCCATC
GTATTTCATGATGAAATAATCGGCGTCATTGGAATCACGGGGCCGCCTTCTGAAGTCAGCCGTTACGGAGAACTTGTCAA
AATGGCAGCGGAGCTAACAGTCGAACAGGCATTTTTAACAAAACAGCTGACATGGGATCAAAGGCTCCGCGAAGAAACGG
TCATCCAAATGATTCAGGGGACTGATCTAGCATCCCTTGACTTCTTTGAACGTGCAGAGCGATTAAACATACCGCTTGAC
GGCCAGCGTACTTGTCTTGTGTTTGAGCTCCCATCGGCTGATATGAAGCCGGCGTTTATTAAAAAACTTGAAAAGCATTT
AACCGCGAAAGATTTGTACGCCAATATTTCTTTAAAAGAGGTCGCAGTTATTCTGGCAGGCGCCCCCACTAAAAGCAGGT
CTGATCTCTTTTCAGCTTGGAACGGCTGGCTCAGCCAATGGAAAACAGTCAGAGGCGCGCTTGGCGAGCAGGCTGACCAG
CTTCAGCAGCTGCCATTTTCCTATCAAAGTGCAAAACAAACGCTCAAGATTGCTGAAAACAATTGTAGTTTATACGATTA
TCGAGAGTTTGCGATTCCTGTTTTATTATCAAAAATAGAGCATCCGGATCAGGAGATTCACTTTCAAAACATCTGGGATC
GCCTTTCCCAAGCAGATCAAAAAGGCGAATTAACTCATACCCTCCTCTGCTACATAGAAGAAAACGGCGAAATCGGGGAA
ACTTCATCAAGACTCTTTATTCACCGCAACACCTTAAACTACCGGCTCAGAAAGATTGAATTGGCAACGGGGTGTAATCC
AAAACGGTTTGACGACCTATTCAAACTGTATACAGCCATTACTCTTTTTTCACCCTTTTGTGCAAATGAACAATTTTAA

Upstream 100 bases:

>100_bases
GCCGAATATGGGTCGCACCTTCTTTAAAATCATTCATAAAAGGCTGGATCGACGGAACAATCACCATTTAAAAAACGATC
TTAGGCAGGAGCATGATGAA

Downstream 100 bases:

>100_bases
TATAGGATAAAAGGACGAAATCCGTATACCTGACCAATTCTCCCTTATACAGAAAGCGTTTACAATTGGACGTAAGGGAG
GGTATGCACATGGATATTCA

Product: YsfB

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MNYLSKELAEEIVERTMSIIRHNINMMDENGVIIASGDRSRIGDEHAGAKDALAAEKVISITPEECSALTGTKPGVNLPI
VFHDEIIGVIGITGPPSEVSRYGELVKMAAELTVEQAFLTKQLTWDQRLREETVIQMIQGTDLASLDFFERAERLNIPLD
GQRTCLVFELPSADMKPAFIKKLEKHLTAKDLYANISLKEVAVILAGAPTKSRSDLFSAWNGWLSQWKTVRGALGEQADQ
LQQLPFSYQSAKQTLKIAENNCSLYDYREFAIPVLLSKIEHPDQEIHFQNIWDRLSQADQKGELTHTLLCYIEENGEIGE
TSSRLFIHRNTLNYRLRKIELATGCNPKRFDDLFKLYTAITLFSPFCANEQF

Sequences:

>Translated_372_residues
MNYLSKELAEEIVERTMSIIRHNINMMDENGVIIASGDRSRIGDEHAGAKDALAAEKVISITPEECSALTGTKPGVNLPI
VFHDEIIGVIGITGPPSEVSRYGELVKMAAELTVEQAFLTKQLTWDQRLREETVIQMIQGTDLASLDFFERAERLNIPLD
GQRTCLVFELPSADMKPAFIKKLEKHLTAKDLYANISLKEVAVILAGAPTKSRSDLFSAWNGWLSQWKTVRGALGEQADQ
LQQLPFSYQSAKQTLKIAENNCSLYDYREFAIPVLLSKIEHPDQEIHFQNIWDRLSQADQKGELTHTLLCYIEENGEIGE
TSSRLFIHRNTLNYRLRKIELATGCNPKRFDDLFKLYTAITLFSPFCANEQF
>Mature_372_residues
MNYLSKELAEEIVERTMSIIRHNINMMDENGVIIASGDRSRIGDEHAGAKDALAAEKVISITPEECSALTGTKPGVNLPI
VFHDEIIGVIGITGPPSEVSRYGELVKMAAELTVEQAFLTKQLTWDQRLREETVIQMIQGTDLASLDFFERAERLNIPLD
GQRTCLVFELPSADMKPAFIKKLEKHLTAKDLYANISLKEVAVILAGAPTKSRSDLFSAWNGWLSQWKTVRGALGEQADQ
LQQLPFSYQSAKQTLKIAENNCSLYDYREFAIPVLLSKIEHPDQEIHFQNIWDRLSQADQKGELTHTLLCYIEENGEIGE
TSSRLFIHRNTLNYRLRKIELATGCNPKRFDDLFKLYTAITLFSPFCANEQF

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=386, Percent_Identity=35.7512953367876, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 42027; Mature: 42027

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYLSKELAEEIVERTMSIIRHNINMMDENGVIIASGDRSRIGDEHAGAKDALAAEKVIS
CCHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHE
ITPEECSALTGTKPGVNLPIVFHDEIIGVIGITGPPSEVSRYGELVKMAAELTVEQAFLT
ECHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQLTWDQRLREETVIQMIQGTDLASLDFFERAERLNIPLDGQRTCLVFELPSADMKPAFI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
KKLEKHLTAKDLYANISLKEVAVILAGAPTKSRSDLFSAWNGWLSQWKTVRGALGEQADQ
HHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQLPFSYQSAKQTLKIAENNCSLYDYREFAIPVLLSKIEHPDQEIHFQNIWDRLSQADQ
HHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
KGELTHTLLCYIEENGEIGETSSRLFIHRNTLNYRLRKIELATGCNPKRFDDLFKLYTAI
CCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHH
TLFSPFCANEQF
HHHHHHHCCCCC
>Mature Secondary Structure
MNYLSKELAEEIVERTMSIIRHNINMMDENGVIIASGDRSRIGDEHAGAKDALAAEKVIS
CCHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHE
ITPEECSALTGTKPGVNLPIVFHDEIIGVIGITGPPSEVSRYGELVKMAAELTVEQAFLT
ECHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQLTWDQRLREETVIQMIQGTDLASLDFFERAERLNIPLDGQRTCLVFELPSADMKPAFI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
KKLEKHLTAKDLYANISLKEVAVILAGAPTKSRSDLFSAWNGWLSQWKTVRGALGEQADQ
HHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQLPFSYQSAKQTLKIAENNCSLYDYREFAIPVLLSKIEHPDQEIHFQNIWDRLSQADQ
HHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
KGELTHTLLCYIEENGEIGETSSRLFIHRNTLNYRLRKIELATGCNPKRFDDLFKLYTAI
CCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHH
TLFSPFCANEQF
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]