Click here to switch to the map view.

The map label for this gene is yhcR [H]

Identifier: 52144237

GI number: 52144237

Start: 1096957

End: 1099323

Strand: Direct

Name: yhcR [H]

Synonym: BCZK0990

Alternate gene names: 52144237

Gene position: 1096957-1099323 (Clockwise)

Preceding gene: 52144239

Following gene: 52144234

Centisome position: 20.69

GC content: 38.19

Gene sequence:

>2367_bases
ATGGCTGTGAAGAAATTGTTAAGTGTCTTTTTATCATTCATACTATTGCTTTCATTTACTGGAACTTTAGTACAAGCAGA
AGAAACTACTTCTATGTCAGTAGAAAAAGCAATTCAAGTATTTAAGCAGCAAGGGAAAACGAAGGGGACAGTGGAAGGAT
ATATCGTTGGATATACGCAAAGTCCTTCTAAGTACACGAGGGATCCGGCTAAATTTGATGATACAAATGTAGCAATTGCC
GATTCACCAAACGAAACAAATCCAGACAAGATCATGCCTGTTCAGTTGCCAAAAGGTGACGTGAGGGCGGCAGTGAATGT
AAAAGATCATCCTGAAAATATTGGGAAGAAAGTTAGTTTAACAGGGACTCTTGAATTATATTTTAGTAGCCCAGGTTTAA
AATCAGTAACAGCTCATAAGTTTCAAGGGGAAGAACAAAACCGTGTTAGTGATGTAGTGGCTTCACCGAATGGAGGAGAA
GTTGCGAAAGGAACAGCAGTAACGTTAACAACGAATACAGAAGGAGCAACAATCTACTATACGTTAGATGGCTCAAACCC
TACAAATAAAAGTGTTCGTTATAACGGACAAATTATCGTGAATGAAAATAGTGTAATGAAAGCAATTGCAGAGAAAGAAG
GGCTTATTTCTTCAGCAATTTCAACTTTTTCATTTGTTATCGTAAACAATGAACCGGTTCGTATTCATGATATTCAAGGG
AAATCACATCTTTCCCCTTACAACGGGAAGAAAGTATACAATGTGGAAGGCGTTGTAACAGCGCTTGATAAAAATGGTTT
TTATATAGAAGATAATCAGCCAGATAATGATCCAGCTACTTCAGAAGGTATGTATGTGTACAAAAAAGATGCGAATGTAG
CAGTAGGAGATCTTATTCAAGTTGATGGAGTAGTAGAAGAATATGTTGGGCCTGGATATGCAGAAAGGTTTGACACAGAC
TTAACGACGACTGAAATTAAAGCGAGCCGCGTTGCTGTAATCGCAAAAGATCAACCTTTACCAGCACCGATTGTACTTGG
AGAAAACGGTGTGAAAATTCCTGATCAAATTATCGATAATGATGCATTCGGTTTATTTAATCCAAACGAAGATGCAATCG
ACTTTTATGAAAGTATAGAAGGTATGCGCGTGACGATGCCAACGCCAAAAATTATCGCTCCTCAGAAAAATGGGAATTTA
TATGTAACAGTGAAAAATGGCGGAAATAAAGTCGTAACGAAATATGGCACACCTGTATTAGATGAAAATCAATTAAACCC
AGAACGTCTTTCTGTAAAAGTACCTCGTGATTATGTAGCGAAAGTAGGGGATACTTTCACTGGAGATATAACAGGGGTAG
TCGGATATGATTACGGTGCGTTCCGCATTGCACCAATAACGGAATTACCATCTGTAGTGGACGGTGGATTTAAGCAAGTA
GGCGCGAATATTCAGCCTCGTCTTGATAAGTTAACAGTTGCTACATATAACATTGAAAACTTCTCGGCGAATAAAAAAGA
AACAACAGATGAAAAAGTAAAGGCGTTAGCGTATTCTATTAAATACAATTTAAAAATGCCAGATATTATCGGGGTAGAGG
AAATGCAAGATAATAATGGAACGATTAATGACGGTACAACAGATGCTTCATTAAGCGCAAAACGTATTATTGATGCGGTG
CTAGAAATTCGCGGGCCAAAGTATGAGTATGTAGAAATTGCTCCGCATAATAATCTAGACGGTGGAGCGCCAGGAGCGAA
TATTCGCGTCGGTTTCTTCTACAACCCATCACGCGTGAAATTAACAGCGGTACCGAAGTTACTTGATAAAAATGTCGTTC
GCATTGGAGACGAAAACCCATTGTTTGAAAGTACACGTAAACCACTTGCGGCAGAATTTACGTTCCAAGGGCAAAACTTA
GTTGTCGTTGCAAATCACTTAAACTCAAAAATAGGAGATGCAACGCCATTTGGAAAAGTGCAGCCGCTCGTATTAAAGAG
TGAAGAAAAACGAGTTCAATTAGCACAAGAAGTAAACAATTTCGTACAAGGTATTCAGAAAAAGAATACGAATGCACCAG
TTGTTGTGTTAGGGGATATGAACGATTTTGAGTTCGCTAAACCACTAAAAACATTAGAAGGAACAATCTTAAAAAATATG
TTAAACACAGTGCCGAAAGAAAATCGCTACACGTATATTCATGAAGGAAATGCACAAGTGCTAGATCATATTTTAGTAAC
AAACAACATCGCACCGCACACAATCGTAGATCCAGTACATTTAAACTCAAACATTATGAAAGAACATGGACGTGTAAGTG
ACCACGACCCAGTACTTGCTCAAATTGATTTGAAGAAAGCTTCTTAA

Upstream 100 bases:

>100_bases
TTAGATTAATTTTTTGTAAAACTTGTCGAAATATCATTCTATATAACGAATCATTTGATATGATAGAAATGCTGAGAAAA
TATGAAATAGGGAGAGGAAA

Downstream 100 bases:

>100_bases
AGTATGGGAACGCTTAGGTAACTAAGCGTTCTTTTATTTGATAAAAATAGATAAGGATAGTGTATAAGCGATTTTTTAGA
ATGATATAGATTGGTCTTCT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MAVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQSPSKYTRDPAKFDDTNVAIA
DSPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSLTGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGE
VAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVRYNGQIIVNENSVMKAIAEKEGLISSAISTFSFVIVNNEPVRIHDIQG
KSHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFDTD
LTTTEIKASRVAVIAKDQPLPAPIVLGENGVKIPDQIIDNDAFGLFNPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNL
YVTVKNGGNKVVTKYGTPVLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGAFRIAPITELPSVVDGGFKQV
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGTINDGTTDASLSAKRIIDAV
LEIRGPKYEYVEIAPHNNLDGGAPGANIRVGFFYNPSRVKLTAVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNL
VVVANHLNSKIGDATPFGKVQPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNM
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS

Sequences:

>Translated_788_residues
MAVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQSPSKYTRDPAKFDDTNVAIA
DSPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSLTGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGE
VAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVRYNGQIIVNENSVMKAIAEKEGLISSAISTFSFVIVNNEPVRIHDIQG
KSHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFDTD
LTTTEIKASRVAVIAKDQPLPAPIVLGENGVKIPDQIIDNDAFGLFNPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNL
YVTVKNGGNKVVTKYGTPVLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGAFRIAPITELPSVVDGGFKQV
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGTINDGTTDASLSAKRIIDAV
LEIRGPKYEYVEIAPHNNLDGGAPGANIRVGFFYNPSRVKLTAVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNL
VVVANHLNSKIGDATPFGKVQPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNM
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS
>Mature_787_residues
AVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQSPSKYTRDPAKFDDTNVAIAD
SPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSLTGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGEV
AKGTAVTLTTNTEGATIYYTLDGSNPTNKSVRYNGQIIVNENSVMKAIAEKEGLISSAISTFSFVIVNNEPVRIHDIQGK
SHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFDTDL
TTTEIKASRVAVIAKDQPLPAPIVLGENGVKIPDQIIDNDAFGLFNPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLY
VTVKNGGNKVVTKYGTPVLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGAFRIAPITELPSVVDGGFKQVG
ANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGTINDGTTDASLSAKRIIDAVL
EIRGPKYEYVEIAPHNNLDGGAPGANIRVGFFYNPSRVKLTAVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNLV
VVANHLNSKIGDATPFGKVQPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNML
NTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS

Specific function: Sugar-nonspecific endonuclease that yields nucleotide 3'-monophosphate products. No 5'-nucleotidase activity was detected, using 5'-AMP as the substrate, in the presence of diverse divalent metals and with various pH values [H]

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TNase-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR004843
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR016071
- InterPro:   IPR006021 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00746 Gram_pos_anchor; PF00149 Metallophos; PF00565 SNase; PF01336 tRNA_anti [H]

EC number: 4.2.99.18

Molecular weight: Translated: 86034; Mature: 85903

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQ
CCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SPSKYTRDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSL
CCHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHCCEEEE
TGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGEVAKGTAVTLTTNTEGATIYY
EEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCEECCEEEEEEECCCCEEEEE
TLDGSNPTNKSVRYNGQIIVNENSVMKAIAEKEGLISSAISTFSFVIVNNEPVRIHDIQG
EECCCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEECCC
KSHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQ
CCCCCCCCCCEEEEECEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCEEE
VDGVVEEYVGPGYAERFDTDLTTTEIKASRVAVIAKDQPLPAPIVLGENGVKIPDQIIDN
CCCHHHHHCCCCHHHHCCCCCCEEEEECEEEEEEECCCCCCCEEEECCCCCCCCHHHHCC
DAFGLFNPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLYVTVKNGGNKVVTKYGTPVL
CCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCC
DENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGAFRIAPITELPSVVDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEECCCCCEEEEEHHHCCHHHCCCHHHH
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNG
CCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHEEEEEEEECCCCCEECHHHHCCCCC
TINDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPHNNLDGGAPGANIRVGFFYNPSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEE
LTAVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNLVVVANHLNSKIGDATPFGKV
EEECHHHHCCCEEEECCCCCCHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC
QPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNM
CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLA
HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECCEECCCHHHHHCCCCCCCCCEEE
QIDLKKAS
EEEEECCC
>Mature Secondary Structure 
AVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQ
CHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SPSKYTRDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSL
CCHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHCCEEEE
TGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGEVAKGTAVTLTTNTEGATIYY
EEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCEECCEEEEEEECCCCEEEEE
TLDGSNPTNKSVRYNGQIIVNENSVMKAIAEKEGLISSAISTFSFVIVNNEPVRIHDIQG
EECCCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEECCC
KSHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQ
CCCCCCCCCCEEEEECEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCEEE
VDGVVEEYVGPGYAERFDTDLTTTEIKASRVAVIAKDQPLPAPIVLGENGVKIPDQIIDN
CCCHHHHHCCCCHHHHCCCCCCEEEEECEEEEEEECCCCCCCEEEECCCCCCCCHHHHCC
DAFGLFNPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLYVTVKNGGNKVVTKYGTPVL
CCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCC
DENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGAFRIAPITELPSVVDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEECCCCCEEEEEHHHCCHHHCCCHHHH
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNG
CCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHEEEEEEEECCCCCEECHHHHCCCCC
TINDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPHNNLDGGAPGANIRVGFFYNPSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEE
LTAVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNLVVVANHLNSKIGDATPFGKV
EEECHHHHCCCEEEECCCCCCHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC
QPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNM
CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLA
HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECCEECCCHHHHHCCCCCCCCCEEE
QIDLKKAS
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]