Click here to switch to the map view.

The map label for this gene is yobV [H]

Identifier: 52144226

GI number: 52144226

Start: 1108803

End: 1109744

Strand: Reverse

Name: yobV [H]

Synonym: BCZK1001

Alternate gene names: 52144226

Gene position: 1109744-1108803 (Counterclockwise)

Preceding gene: 52144218

Following gene: 52144228

Centisome position: 20.93

GC content: 34.61

Gene sequence:

>942_bases
ATGAATCGGACAGATCGTTTATTAGCCATATTAATTGAATTACAAAGAAGACAAACTGTTACAGCAAAAAGCTTAGCTGA
AAAATTCGAAACAAGTATAAGGACTATTTATCGAGACATGGATGCACTTAACGAATCGGGTATTCCTATTTATTCAATGC
CTGGTCACGGTTATTCATTAATGGATGGTTATTTCTTGCCCCCCATTCAGCTTACGCCTGAAGAGGCTGTTACTCTTTTA
CTAGGCGGTGATTATATCGAGAAAACTTTCACTTCTTCTTTTTCTGTAAATGCACGATCAGCAAAAGAGAAACTTGAAAT
TGTTCTCCCTGCTGATCAACAAAAGAAAGCTCAGGAATTACGAGAAACTTTTCGTTTCCTTTCTCCTATATTTTCACATC
AGCAATCTGAACAAGAAAAACTAGAAAATCAACTTCTCCTATTGCAAGAATCTATTCAAAAAGAACAAGCTATCTCTTTT
TCTTATCGGAAACCGAGAGAAACTACAAAAATAAAGCGGACCGTTCATCCTTATGGCTTAGTCAATATTTCAGGAATTTG
GTACATCGTTGCCCACTGTTTACTTCGAAAACAAATACGCAATTTCCGCTTAGATCGTATGGATACGTTACAGCAAGAAC
AAGAATTCTTTACAAAGCCGAAAGATTTTTCTTTACAAAACTATAAGCCTGAAAGCAATCGTACTGTTATGATTCATTTA
TTGTTTCCATCTCATATTGCACATAAAATTATCGAATCACGATATTATTTTATAGATTCATATGAACATAGAAATAACGG
TTTTCACGTCTTTTTGAAATCAAGAAATATAGACGAAGTGTTTCAATGGGTATTGAGCTGGGGGAGCCAAGTGCAAGTAC
TTGAGCCAAAAATTCTTTCTGAGAAAATCCGTGATGAAGCAAAAAAAATGTTAAAACTTTAA

Upstream 100 bases:

>100_bases
ATATTATACATAGGGAAAAGTATGTTAATGGGAGGGGAATTTATACTGCTTTTAGAAGTTTATAGTAAGCATATTTATAA
AAATTTGAAGGTGATATTTC

Downstream 100 bases:

>100_bases
TTTCACTACTGACATAATGCTGTCAGTAGCCCCCCTTTATAGTAGGTATTAACAAATACATTTTCATAAAAAGGAGTTAG
CAATATGAAGAAATTTGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNRTDRLLAILIELQRRQTVTAKSLAEKFETSIRTIYRDMDALNESGIPIYSMPGHGYSLMDGYFLPPIQLTPEEAVTLL
LGGDYIEKTFTSSFSVNARSAKEKLEIVLPADQQKKAQELRETFRFLSPIFSHQQSEQEKLENQLLLLQESIQKEQAISF
SYRKPRETTKIKRTVHPYGLVNISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTVMIHL
LFPSHIAHKIIESRYYFIDSYEHRNNGFHVFLKSRNIDEVFQWVLSWGSQVQVLEPKILSEKIRDEAKKMLKL

Sequences:

>Translated_313_residues
MNRTDRLLAILIELQRRQTVTAKSLAEKFETSIRTIYRDMDALNESGIPIYSMPGHGYSLMDGYFLPPIQLTPEEAVTLL
LGGDYIEKTFTSSFSVNARSAKEKLEIVLPADQQKKAQELRETFRFLSPIFSHQQSEQEKLENQLLLLQESIQKEQAISF
SYRKPRETTKIKRTVHPYGLVNISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTVMIHL
LFPSHIAHKIIESRYYFIDSYEHRNNGFHVFLKSRNIDEVFQWVLSWGSQVQVLEPKILSEKIRDEAKKMLKL
>Mature_313_residues
MNRTDRLLAILIELQRRQTVTAKSLAEKFETSIRTIYRDMDALNESGIPIYSMPGHGYSLMDGYFLPPIQLTPEEAVTLL
LGGDYIEKTFTSSFSVNARSAKEKLEIVLPADQQKKAQELRETFRFLSPIFSHQQSEQEKLENQLLLLQESIQKEQAISF
SYRKPRETTKIKRTVHPYGLVNISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTVMIHL
LFPSHIAHKIIESRYYFIDSYEHRNNGFHVFLKSRNIDEVFQWVLSWGSQVQVLEPKILSEKIRDEAKKMLKL

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 36835; Mature: 36835

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTDRLLAILIELQRRQTVTAKSLAEKFETSIRTIYRDMDALNESGIPIYSMPGHGYSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
MDGYFLPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVNARSAKEKLEIVLPADQQKKAQEL
CCCEECCCCEECHHHHEEEEECCHHHHHHHHCCCCCCHHHHHCCEEEEECCCHHHHHHHH
RETFRFLSPIFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCE
VNISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTVMIHL
EEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
LFPSHIAHKIIESRYYFIDSYEHRNNGFHVFLKSRNIDEVFQWVLSWGSQVQVLEPKILS
ECHHHHHHHHHHHHHHEEECEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEECHHHHH
EKIRDEAKKMLKL
HHHHHHHHHHHCC
>Mature Secondary Structure
MNRTDRLLAILIELQRRQTVTAKSLAEKFETSIRTIYRDMDALNESGIPIYSMPGHGYSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
MDGYFLPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVNARSAKEKLEIVLPADQQKKAQEL
CCCEECCCCEECHHHHEEEEECCHHHHHHHHCCCCCCHHHHHCCEEEEECCCHHHHHHHH
RETFRFLSPIFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCE
VNISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTVMIHL
EEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
LFPSHIAHKIIESRYYFIDSYEHRNNGFHVFLKSRNIDEVFQWVLSWGSQVQVLEPKILS
ECHHHHHHHHHHHHHHEEECEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEECHHHHH
EKIRDEAKKMLKL
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]