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The map label for this gene is sigM [H]

Identifier: 52144214

GI number: 52144214

Start: 1121834

End: 1122319

Strand: Reverse

Name: sigM [H]

Synonym: BCZK1013

Alternate gene names: 52144214

Gene position: 1122319-1121834 (Counterclockwise)

Preceding gene: 52144211

Following gene: 52144213

Centisome position: 21.17

GC content: 37.65

Gene sequence:

>486_bases
GTGAAACGTAAACAATCATTAGAAGAAATTTATTCCGAGCACATGCAAGATTTATTTCGCTACCTTCTCTCCCTAACCGG
AGATTGCCACTATGCGGAAGATCTCATGCAAGAAACATTTTACCGAATGCTCGTCCACATTGACTATTATAAAGGAGAAG
AAATTAGGCCGTGGTTATTTACAATTGCCTACAACGCCTTTATCGATTGGTATCGAAAAGAAAAAAGATATAAAACGACG
ACAATTACAGAATTCCATTTACCAAACGTGCCAAGTACAGAACACTCTTATTTCATAAAACATGAGATTGCTAGTTGGTT
AGACAGTTTATCTTCTCTTCCGCTAGAGAGACGAAATGTTCTGTTACTACGAGATTACTACGGATTCTCGTATAAAGAAA
TAGCAGAAATGACCGGTCTCTCATTAGCGAAAGTAAAAATTGAATTACACCGCGGACGAAAAGAAACGAGAAACATGAAG
GAGTGA

Upstream 100 bases:

>100_bases
GAATCTTATCCAATTCTTGACGTTTTTTACTATAATTCCAAAAACAAATGTAACTTTTTTATATGTATTTCGTTGTTATG
TATGAAGGGAGGGAAAGGTA

Downstream 100 bases:

>100_bases
TACAGATGGGGTGTACAGCATTTAAAAAACTATGGGAGAAATACGAAAACGGAACGCTCACGCATAATGAACAAGAACTG
TTAGAAAATCATATTGAGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDCHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETRNMK
E

Sequences:

>Translated_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDCHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETRNMK
E
>Mature_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDCHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETRNMK
E

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19580; Mature: 19580

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDCHYAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKRYKTTTITEFHLPNVPSTEHSYFIKHEIASWLDSLSSLPLERRNV
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETRNMKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCC
>Mature Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDCHYAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKRYKTTTITEFHLPNVPSTEHSYFIKHEIASWLDSLSSLPLERRNV
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETRNMKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]