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The map label for this gene is yhdL [H]

Identifier: 52144213

GI number: 52144213

Start: 1120710

End: 1121828

Strand: Reverse

Name: yhdL [H]

Synonym: BCZK1012

Alternate gene names: 52144213

Gene position: 1121828-1120710 (Counterclockwise)

Preceding gene: 52144214

Following gene: 52144218

Centisome position: 21.16

GC content: 36.55

Gene sequence:

>1119_bases
ATGGGGTGTACAGCATTTAAAAAACTATGGGAGAAATACGAAAACGGAACGCTCACGCATAATGAACAAGAACTGTTAGA
AAATCATATTGAGACATGTGAAGAATGTGAAGCTTACTTAGATCAATTGCTTTCGAAGAGTGAACCAATAAAGAAAAAAC
TACCACCACAAAAACTGAAAGTCCCATTTTGGAAAATAAAATGGAAACAACGTTGGCAAACCGTTAGTTTTGTCCTTGCC
GTTTGTATTGCAATCTATTTTGTCGGCCATTTTTCGTCTTCTCTTTACTTCTATAATGTGAAAAAGTTAGTCGAAGTAGA
TGAAATTCCAGCACTTGCACTAGAAGCAACAATTCCAAATATTCGTTCCACTGGAGGCAGTATAAAAATTAAACCCTTTT
TCCGTACAGAACATGAAATGAATTTATATAAAACGGTCGGTAAAAAAGAAATGCCAATTGGTACAGTAACAACGCGTAGT
TTCTTATCATCTGTAACTGACACAAATCAATCATGGGCAAATACACCCTATTCCAACAAACTTTCCTTTGTTCACCCGAA
AATCGAGCAAGATGATCATTTGAAAGAAATCTCTAAAAAAGTTTGGAGTACACTCGAAAAGATACATGAGGGCACCGTTG
CAGAAGTAGCGATATCTTTTGACAAACCTTACACTTTACAAGAATTAGCATCCATTCTATATAGCACATTTGAAGCACAA
GAAATGCCGCCCACTCCTATATGGTACGCTTTAGACACAGGGCAAGAAAGAATAGATGAAGAAGATTTCATTCTACATGG
CCGAGAGGTTATCGGATTTTCAGAACATATAAATCTCCCTGATAATGAAGCAGAACGACCGAAGACAAAAGAAGATGAAG
TAATCGAAATGATGCGTATTCTTTCTACACATAAAGAAACTGTAAGTAAAACTACTCAGACTTCTGAAAAAGAGCTGAAC
TTAGATAAACGCTATGATTATGTAAAAGATACCGGTGTGAAAGTATATGGGATCGTCATTACTGGACCGTCGAAAGAGTT
ATTAAAATTACAAAACTCGCCTCACGTTCGTTATGCGACTCTTGGAGATATTGAGGTTTGGAATTGGTTTGATCAGTGA

Upstream 100 bases:

>100_bases
ATAAAGAAATAGCAGAAATGACCGGTCTCTCATTAGCGAAAGTAAAAATTGAATTACACCGCGGACGAAAAGAAACGAGA
AACATGAAGGAGTGATACAG

Downstream 100 bases:

>100_bases
TGTGGGAAAAGTAGAGCATCTAGGAGTGATGCTCTACTTTTTAATCTGAAACCACTTTCACATACATCCCTCTCACCGCT
TGTTCATAAGCGCTATCACT

Product: sigma-M negative effector

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MGCTAFKKLWEKYENGTLTHNEQELLENHIETCEECEAYLDQLLSKSEPIKKKLPPQKLKVPFWKIKWKQRWQTVSFVLA
VCIAIYFVGHFSSSLYFYNVKKLVEVDEIPALALEATIPNIRSTGGSIKIKPFFRTEHEMNLYKTVGKKEMPIGTVTTRS
FLSSVTDTNQSWANTPYSNKLSFVHPKIEQDDHLKEISKKVWSTLEKIHEGTVAEVAISFDKPYTLQELASILYSTFEAQ
EMPPTPIWYALDTGQERIDEEDFILHGREVIGFSEHINLPDNEAERPKTKEDEVIEMMRILSTHKETVSKTTQTSEKELN
LDKRYDYVKDTGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEVWNWFDQ

Sequences:

>Translated_372_residues
MGCTAFKKLWEKYENGTLTHNEQELLENHIETCEECEAYLDQLLSKSEPIKKKLPPQKLKVPFWKIKWKQRWQTVSFVLA
VCIAIYFVGHFSSSLYFYNVKKLVEVDEIPALALEATIPNIRSTGGSIKIKPFFRTEHEMNLYKTVGKKEMPIGTVTTRS
FLSSVTDTNQSWANTPYSNKLSFVHPKIEQDDHLKEISKKVWSTLEKIHEGTVAEVAISFDKPYTLQELASILYSTFEAQ
EMPPTPIWYALDTGQERIDEEDFILHGREVIGFSEHINLPDNEAERPKTKEDEVIEMMRILSTHKETVSKTTQTSEKELN
LDKRYDYVKDTGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEVWNWFDQ
>Mature_371_residues
GCTAFKKLWEKYENGTLTHNEQELLENHIETCEECEAYLDQLLSKSEPIKKKLPPQKLKVPFWKIKWKQRWQTVSFVLAV
CIAIYFVGHFSSSLYFYNVKKLVEVDEIPALALEATIPNIRSTGGSIKIKPFFRTEHEMNLYKTVGKKEMPIGTVTTRSF
LSSVTDTNQSWANTPYSNKLSFVHPKIEQDDHLKEISKKVWSTLEKIHEGTVAEVAISFDKPYTLQELASILYSTFEAQE
MPPTPIWYALDTGQERIDEEDFILHGREVIGFSEHINLPDNEAERPKTKEDEVIEMMRILSTHKETVSKTTQTSEKELNL
DKRYDYVKDTGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEVWNWFDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43033; Mature: 42902

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCTAFKKLWEKYENGTLTHNEQELLENHIETCEECEAYLDQLLSKSEPIKKKLPPQKLK
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHC
VPFWKIKWKQRWQTVSFVLAVCIAIYFVGHFSSSLYFYNVKKLVEVDEIPALALEATIPN
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCEEEHHCCCC
IRSTGGSIKIKPFFRTEHEMNLYKTVGKKEMPIGTVTTRSFLSSVTDTNQSWANTPYSNK
HHCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
LSFVHPKIEQDDHLKEISKKVWSTLEKIHEGTVAEVAISFDKPYTLQELASILYSTFEAQ
EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
EMPPTPIWYALDTGQERIDEEDFILHGREVIGFSEHINLPDNEAERPKTKEDEVIEMMRI
CCCCCCEEEEECCCHHHCCCCHHEEECHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LSTHKETVSKTTQTSEKELNLDKRYDYVKDTGVKVYGIVITGPSKELLKLQNSPHVRYAT
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCEEEEE
LGDIEVWNWFDQ
ECCEEECCCCCC
>Mature Secondary Structure 
GCTAFKKLWEKYENGTLTHNEQELLENHIETCEECEAYLDQLLSKSEPIKKKLPPQKLK
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHC
VPFWKIKWKQRWQTVSFVLAVCIAIYFVGHFSSSLYFYNVKKLVEVDEIPALALEATIPN
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCEEEHHCCCC
IRSTGGSIKIKPFFRTEHEMNLYKTVGKKEMPIGTVTTRSFLSSVTDTNQSWANTPYSNK
HHCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
LSFVHPKIEQDDHLKEISKKVWSTLEKIHEGTVAEVAISFDKPYTLQELASILYSTFEAQ
EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
EMPPTPIWYALDTGQERIDEEDFILHGREVIGFSEHINLPDNEAERPKTKEDEVIEMMRI
CCCCCCEEEEECCCHHHCCCCHHEEECHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LSTHKETVSKTTQTSEKELNLDKRYDYVKDTGVKVYGIVITGPSKELLKLQNSPHVRYAT
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCEEEEE
LGDIEVWNWFDQ
ECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10216858 [H]