Click here to switch to the map view.

The map label for this gene is yibQ [H]

Identifier: 52144005

GI number: 52144005

Start: 1326510

End: 1327280

Strand: Reverse

Name: yibQ [H]

Synonym: BCZK1225

Alternate gene names: 52144005

Gene position: 1327280-1326510 (Counterclockwise)

Preceding gene: 52144002

Following gene: 52144016

Centisome position: 25.04

GC content: 36.06

Gene sequence:

>771_bases
ATGCGCAAATATACGATTGCATTGCTTATTTTGACTATGTTCTTACCATCTTTCTTGTTTCCTGTTCAAGCAAAGGCCCA
TACAAACAAAGTAGCTATTGTTATTGATGACTTCGGCAATAATATGAAGGGGACTGATAAAATGTTATCACTTCCTATTC
CCCTAACTGTTGCTGTTATGCCTTTTCTTCCTTCCACAAAGGAAGATGCGATAGCGGCTCATAAAAAAGGACACGAAGTT
ATTATACATATGCCAATGGAACCGATTAAAGGTAAAAAAGAATGGCTTGGACCAAAAGCAATTACAACTGATTTAAGCGA
CGAAGAAATAAACAACCGACTCGAACAAGCGATTCAAGAAGTACCACATGCAATTGGGATGAATAATCATATGGGATCAA
AAGTGACTGCGGACGAAAGAATTGTACGACTTATACTTGCAGCTTGTAAAAAACACGGTTTATTTTATTTAGATAGCAAA
ACAAATCCTAAGAGTGTCGTCCCAAAAATCGGAAAAGAATTAGGAGTGCCAATTATTGAAAATCAATTATTTTTTGATGA
CGTGTACACAGCGGCACATATTTCAAAACAAGCCCAATTACTCATTAAAAAACTTCAAGAAAAACCGATTATGGTAGCTA
TCGGACATGTTGGGCCTCCAGGTGAAATTACATCACGTGTTATAGAAACTTCTATTCCTAAAATTCGTGAACATGCAGAT
TTTATTTTTTTATCCGATTTAGCATTATCTCCGCCTCCTGTTTCGAAATAA

Upstream 100 bases:

>100_bases
TTCCCTATTTTCCATATACTTTTCTTCGACATTTTTTGTTTAATTTATATAAAAACGCAAACCATAATGATGATTGATAC
TATAGAAAGGAAATAGTTAT

Downstream 100 bases:

>100_bases
GATTTATAACTCAAACTAAAAAAGGGAGCCATTTGCATATAGCAAATGGCTCCCTTTCCTTTTCATCTTAAATATAATCT
ACATGACTCACCCTGAATCC

Product: divergent polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MRKYTIALLILTMFLPSFLFPVQAKAHTNKVAIVIDDFGNNMKGTDKMLSLPIPLTVAVMPFLPSTKEDAIAAHKKGHEV
IIHMPMEPIKGKKEWLGPKAITTDLSDEEINNRLEQAIQEVPHAIGMNNHMGSKVTADERIVRLILAACKKHGLFYLDSK
TNPKSVVPKIGKELGVPIIENQLFFDDVYTAAHISKQAQLLIKKLQEKPIMVAIGHVGPPGEITSRVIETSIPKIREHAD
FIFLSDLALSPPPVSK

Sequences:

>Translated_256_residues
MRKYTIALLILTMFLPSFLFPVQAKAHTNKVAIVIDDFGNNMKGTDKMLSLPIPLTVAVMPFLPSTKEDAIAAHKKGHEV
IIHMPMEPIKGKKEWLGPKAITTDLSDEEINNRLEQAIQEVPHAIGMNNHMGSKVTADERIVRLILAACKKHGLFYLDSK
TNPKSVVPKIGKELGVPIIENQLFFDDVYTAAHISKQAQLLIKKLQEKPIMVAIGHVGPPGEITSRVIETSIPKIREHAD
FIFLSDLALSPPPVSK
>Mature_256_residues
MRKYTIALLILTMFLPSFLFPVQAKAHTNKVAIVIDDFGNNMKGTDKMLSLPIPLTVAVMPFLPSTKEDAIAAHKKGHEV
IIHMPMEPIKGKKEWLGPKAITTDLSDEEINNRLEQAIQEVPHAIGMNNHMGSKVTADERIVRLILAACKKHGLFYLDSK
TNPKSVVPKIGKELGVPIIENQLFFDDVYTAAHISKQAQLLIKKLQEKPIMVAIGHVGPPGEITSRVIETSIPKIREHAD
FIFLSDLALSPPPVSK

Specific function: Unknown

COG id: COG2861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0755 [H]

Homologues:

Organism=Escherichia coli, GI87082298, Length=203, Percent_Identity=34.9753694581281, Blast_Score=129, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006837
- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF04748 Polysacc_deac_2 [H]

EC number: NA

Molecular weight: Translated: 28344; Mature: 28344

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYTIALLILTMFLPSFLFPVQAKAHTNKVAIVIDDFGNNMKGTDKMLSLPIPLTVAVM
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCHHHHHH
PFLPSTKEDAIAAHKKGHEVIIHMPMEPIKGKKEWLGPKAITTDLSDEEINNRLEQAIQE
CCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHHHH
VPHAIGMNNHMGSKVTADERIVRLILAACKKHGLFYLDSKTNPKSVVPKIGKELGVPIIE
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEC
NQLFFDDVYTAAHISKQAQLLIKKLQEKPIMVAIGHVGPPGEITSRVIETSIPKIREHAD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
FIFLSDLALSPPPVSK
EEEEECCCCCCCCCCC
>Mature Secondary Structure
MRKYTIALLILTMFLPSFLFPVQAKAHTNKVAIVIDDFGNNMKGTDKMLSLPIPLTVAVM
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCHHHHHH
PFLPSTKEDAIAAHKKGHEVIIHMPMEPIKGKKEWLGPKAITTDLSDEEINNRLEQAIQE
CCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHHHH
VPHAIGMNNHMGSKVTADERIVRLILAACKKHGLFYLDSKTNPKSVVPKIGKELGVPIIE
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEC
NQLFFDDVYTAAHISKQAQLLIKKLQEKPIMVAIGHVGPPGEITSRVIETSIPKIREHAD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
FIFLSDLALSPPPVSK
EEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]