Click here to switch to the map view.

The map label for this gene is ypbD [H]

Identifier: 52143862

GI number: 52143862

Start: 1461774

End: 1462340

Strand: Direct

Name: ypbD [H]

Synonym: BCZK1367

Alternate gene names: 52143862

Gene position: 1461774-1462340 (Clockwise)

Preceding gene: 52143863

Following gene: 52143861

Centisome position: 27.58

GC content: 33.69

Gene sequence:

>567_bases
ATGATGAACATTCAAAGGCATAATATTGAAGATATGAGTCCGAAAGAAATAAGGCTGAATCTGTATATCACACAGTTCAT
TATTATTGGTATCGGTTGTTTACTAGCATATATACTATTCCGAGATATAAAATCGGTGTATAGTCTGTGGAAATGGGAAC
CGGTGTCTATACTTATAATAGGTGGCTTGTTAGCAATTGGTATTGTGTTATTAGATTATGTTGCAATGCGGGTGTTTCCA
GAGTCTTGGTTTGATGATGGTGGTATTAACGATAGGATGTTTCAAGGGATGTCAGTTATGCATCTACTCGTTATTACGTT
CATTATCGGCTTTGCAGAAGAATTTTTATTTAGAGGTGTAGTGCAGACGCACTTTGGAATTGTAATAGCGAGTTTTGTAT
TTGCAGTGTTACATATTCGGTATATAAAAAAGCCATTTTTGTTTTGTTTCGTCTGTTTCATTAGTTTTGTCTTTGGTTAC
GTATTTGAATGGACAGGAAATTTGTTTATAACAATCTTTGCACACTTTCTTGTTGATTTTATAATGGGACTCCAATTAAG
AAAATAA

Upstream 100 bases:

>100_bases
CAAAAACAGATTATAAAAAAAGACAAGCGCAACAATCGGATTTCGACTATAATTGGGAAACAGAGTTACAAAAGCTTTTC
GGTCTAGAGAAGATGGGGGA

Downstream 100 bases:

>100_bases
ATGGAAGGTGGTGGTGAACAACATGAGGAAACGAATTCCTGATTTTGAAGAGGAATTAGAAGTTGAGCGAGTGGAAGAAA
AAGAAGGTTTACCGCCGCGT

Product: CAAX amino terminal protease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MMNIQRHNIEDMSPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFP
ESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGY
VFEWTGNLFITIFAHFLVDFIMGLQLRK

Sequences:

>Translated_188_residues
MMNIQRHNIEDMSPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFP
ESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGY
VFEWTGNLFITIFAHFLVDFIMGLQLRK
>Mature_188_residues
MMNIQRHNIEDMSPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFP
ESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGY
VFEWTGNLFITIFAHFLVDFIMGLQLRK

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 21903; Mature: 21903

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNIQRHNIEDMSPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GGLLAIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
IMGLQLRK
HHHHHCCC
>Mature Secondary Structure
MMNIQRHNIEDMSPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GGLLAIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
IMGLQLRK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]