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The map label for this gene is yvbU [H]

Identifier: 52143499

GI number: 52143499

Start: 1858960

End: 1859829

Strand: Direct

Name: yvbU [H]

Synonym: BCZK1735

Alternate gene names: 52143499

Gene position: 1858960-1859829 (Clockwise)

Preceding gene: 52143502

Following gene: 52143498

Centisome position: 35.07

GC content: 37.01

Gene sequence:

>870_bases
ATGACCATTACACAACTTCAAGTGTTAATAAAAACTGTTGAGTTAGGTAGTTTTACGAAGGCATCCAGGGTGTTAAATAT
GACGCAGCCAGCTGTAAGTCATGCGATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGGGATAAACGAA
AAGGGTTACTCGTTACGGATGTAGGAAACAGAATTCTTGTACATATTAGAGAGATTTTGAACGGTATAGAGAAGATTGAA
CAAGAAGTTGCAATGGAGAAAGGGCACGAAGTTGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTCTT
ACCGAAAATGATAAACCATTTTAAGGAGAAGTATCCGAACTTAGAAGTCGTTCTTTACGAAGGAACGATTAAAGAAGTTG
AAGATTGGTTAGTATCGAGGGTTGTTGATATAGGGATTGTTATTTTACCTAATAAAGAGATGGAGATTGTTCCATTAACG
AAGGGGAAAATGGTTGTTATTTTAAGAGAGGATCATCCTCTTTGCAAGAAGGACGCTATTACAATTCGTGATTTGGAGAA
TGAACCGATCATATTATGTAAGGGCGGATACGAACCACCTATTATCGATATGTTTAAACAAGCAAATGTACCACTTCGAG
CTGAGTATGTAATTTCGACAGTTACGACAGCTTTAAATATGATTCAAGAAGGGTTAGGCATTGCAATATTAGCTGAATTA
TCTTTAACAAATTTACCAAAAAATGTGCAAACGAGAGAATTGGAACCGCAAGTATGGAGAGAAATTGCTTTAGCTATTCC
TTCATTAAGGGATTCTTCAATCGCTGTGCAGCTATTTATTGAAGAATTTCAGGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
CACTGTAAGACCTCCTTGATGTTATTCATTTCACTATGATATGATATCGACTGTAATAAATAAAATGAATCTTTTTTATG
AGGAGTATAAGTGATTAGTT

Downstream 100 bases:

>100_bases
AAAGAGGTGTCTCGTATATTATAATGGGACACTTTTTAATTTACTTATAAAAAATCTGTGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATGATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTITQLQVLIKTVELGSFTKASRVLNMTQPAVSHAISSIESELGVTILIRDKRKGLLVTDVGNRILVHIREILNGIEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAIPSLRDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_289_residues
MTITQLQVLIKTVELGSFTKASRVLNMTQPAVSHAISSIESELGVTILIRDKRKGLLVTDVGNRILVHIREILNGIEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAIPSLRDSSIAVQLFIEEFQALFAE
>Mature_288_residues
TITQLQVLIKTVELGSFTKASRVLNMTQPAVSHAISSIESELGVTILIRDKRKGLLVTDVGNRILVHIREILNGIEKIEQ
EVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTK
GKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELS
LTNLPKNVQTRELEPQVWREIALAIPSLRDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=27.710843373494, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.2258064516129, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI157672245, Length=206, Percent_Identity=26.2135922330097, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=22.1774193548387, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=26.1818181818182, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=23.758865248227, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=27.4285714285714, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788481, Length=278, Percent_Identity=26.978417266187, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789204, Length=290, Percent_Identity=23.448275862069, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786401, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=25.2032520325203, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=23.265306122449, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=24.4094488188976, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081904, Length=205, Percent_Identity=25.8536585365854, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789506, Length=231, Percent_Identity=25.1082251082251, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790262, Length=277, Percent_Identity=21.6606498194946, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=29.3650793650794, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789440, Length=133, Percent_Identity=35.3383458646617, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32348; Mature: 32216

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITQLQVLIKTVELGSFTKASRVLNMTQPAVSHAISSIESELGVTILIRDKRKGLLVTD
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEE
VGNRILVHIREILNGIEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAIPSLRDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TITQLQVLIKTVELGSFTKASRVLNMTQPAVSHAISSIESELGVTILIRDKRKGLLVTD
CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEE
VGNRILVHIREILNGIEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAIPSLRDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]