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The map label for this gene is pdaA [H]

Identifier: 52143454

GI number: 52143454

Start: 1903512

End: 1904339

Strand: Direct

Name: pdaA [H]

Synonym: BCZK1778

Alternate gene names: 52143454

Gene position: 1903512-1904339 (Clockwise)

Preceding gene: 52143457

Following gene: 52143455

Centisome position: 35.91

GC content: 37.68

Gene sequence:

>828_bases
ATGTATTATTTTTATTCACCAGAAGGGTTTGCTCCATATCAATGGGGGCTAGAACGAGATGTTTCGTATGCCTATATGCC
ATATAGCTTATTTTATTACGGAGATTATATAAGAACATTGCCATACACATATATCCCTCAAAGCTATGAAGTACAAATGA
AAGCAGATGAACGTGGATCGTGGACACCATTTTCTTGGGTCGAAAAATATGCGTACGCATTTTCAGGACCGTACAATAAA
GCGGAAGTCGCACTTACATTTGATGACGGACCAGATTTAGAATTTACGCCAAAAATATTAGATAAGTTAAAACAACATAA
TGTAAAAGCTACTTTTTTCTTACTTGGTGAAAACGCAGAAAAGTTTCCGAATGTCGTAAAGCGTATTGCGAATGAAGGGC
ATGTAATTGGCAATCATACGTATAGTCATCCAAATTTAGCGAAAGTAAATGATGCTGAGTACCGTAATCAAATTATAAAA
ACAGAAGAAATATTAAATCGTTTAGCTGGGTATGCACCGAAATTTATTCGCCCACCGTATGGTGAAATACTTGAAGATCA
ATTGAAGTGGGCAACTGAGCAAAATTTTATGATTGTACAGTGGAGTGTTGACACGGTTGATTGGAAAGGTGTAAGTGCTG
ATACGATTACAAATAACGTGTTAGGGAACTCATTTCCTGGTAGTGTCATACTTCAGCATTCAACTCCAGGTGGGCATTTG
CAAGGGTCCGTAGAGGCGCTAGACAAAATTATTCCGCAGTTAAAAACGAAAGGGGCGCGTTTTGTAACACTTCCAAGTAT
GTTCCAGACATCAAAAGAAAGAAAATGA

Upstream 100 bases:

>100_bases
ACTGTCCAAATGACGGACAGTCTTATTTTTGTTTACGAATAACAATTTCTCTAACAAAGTGCAGATGAATCACATATGAA
ACTTTAGGGAGGTTTTTATT

Downstream 100 bases:

>100_bases
ATGTGTTATAAATTGGGGAAAACAGGATTATGTCGTATAATGAAGGTGTAGGTTAGGAGGGGATATAATTGATGTATGCG
CTAATAAACATAGGAATGAG

Product: polysaccharide deacetylase

Products: chitosan; acetate

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MYYFYSPEGFAPYQWGLERDVSYAYMPYSLFYYGDYIRTLPYTYIPQSYEVQMKADERGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRNQIIK
TEEILNRLAGYAPKFIRPPYGEILEDQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQHSTPGGHL
QGSVEALDKIIPQLKTKGARFVTLPSMFQTSKERK

Sequences:

>Translated_275_residues
MYYFYSPEGFAPYQWGLERDVSYAYMPYSLFYYGDYIRTLPYTYIPQSYEVQMKADERGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRNQIIK
TEEILNRLAGYAPKFIRPPYGEILEDQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQHSTPGGHL
QGSVEALDKIIPQLKTKGARFVTLPSMFQTSKERK
>Mature_275_residues
MYYFYSPEGFAPYQWGLERDVSYAYMPYSLFYYGDYIRTLPYTYIPQSYEVQMKADERGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRNQIIK
TEEILNRLAGYAPKFIRPPYGEILEDQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQHSTPGGHL
QGSVEALDKIIPQLKTKGARFVTLPSMFQTSKERK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=166, Percent_Identity=36.7469879518072, Blast_Score=92, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6323338, Length=134, Percent_Identity=36.5671641791045, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021729
- InterPro:   IPR011330
- InterPro:   IPR017219
- InterPro:   IPR002509 [H]

Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]

EC number: 3.5.1.41

Molecular weight: Translated: 31593; Mature: 31593

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYFYSPEGFAPYQWGLERDVSYAYMPYSLFYYGDYIRTLPYTYIPQSYEVQMKADERGS
CEEEECCCCCCCHHCCCCCCCEEEECCEEEEEEHHHHHHCCCEECCCCEEEEEEECCCCC
WTPFSWVEKYAYAFSGPYNKAEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAE
CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCEEEEEEECCCHH
KFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRNQIIKTEEILNRLAGYAPKFIRPPY
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GEILEDQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQHSTPGGHL
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCC
QGSVEALDKIIPQLKTKGARFVTLPSMFQTSKERK
CCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCC
>Mature Secondary Structure
MYYFYSPEGFAPYQWGLERDVSYAYMPYSLFYYGDYIRTLPYTYIPQSYEVQMKADERGS
CEEEECCCCCCCHHCCCCCCCEEEECCEEEEEEHHHHHHCCCEECCCCEEEEEEECCCCC
WTPFSWVEKYAYAFSGPYNKAEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAE
CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCEEEEEEECCCHH
KFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRNQIIKTEEILNRLAGYAPKFIRPPY
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GEILEDQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQHSTPGGHL
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCC
QGSVEALDKIIPQLKTKGARFVTLPSMFQTSKERK
CCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: chitin; H2O

Specific reaction: chitin + H2O = chitosan + acetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]