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The map label for this gene is yraR [H]

Identifier: 52143392

GI number: 52143392

Start: 1969213

End: 1969872

Strand: Direct

Name: yraR [H]

Synonym: BCZK1842

Alternate gene names: 52143392

Gene position: 1969213-1969872 (Clockwise)

Preceding gene: 52143390

Following gene: 52143394

Centisome position: 37.15

GC content: 34.55

Gene sequence:

>660_bases
ATGAATAAGCGAACAGCGTTAGTACTTGGTGCAAGTGGTTTAGTTGGGCAAGAGATAACGCGTCTATTACTTGAATCAGA
TTACTACGATTCGGTTACTATTTTTGTAAGAGAACCAATGCAATGGCAACATGAAAAGTTACAGCAAAAGCAAGTAGATT
ATTTGGCATTAGAGGAATATAAAGAGTTCTTTGCTGTAGATGACGTATTTAGTTGTCTAGGAACAACAATCAAAAAAGCA
AAAACAAAAGCTAATTTCAAAAAGGTAGATTATGAATATACGTTACGAGCGGCTTGTTTAGCTGAAAAACAAGGGGTGCA
AAATTTTCTTGTTGTGTCCTCAATGGGAGCGAATCCTAAATCGTTTTTCTTTTATTCACAAGTGAAAGGAAGAATGGAAG
AGGAATTGCAAAAGTTAGTAATCGGTGGTATTCACATTTTTAGGCCATCTTTATTAGTAGGAAATCGACAAGAATTTCGC
TTTGGTGAACGAATGGCGGAAAAATTATCTCGTATTATTCCTTTTATATTTAAAGGAGCCTTCAAAAAGTATAAACCGAT
TTCAGCTAAAGATGTTGCAAAAGGGATGTATATAACTGCATTGCGAGAAGAATCAGGTATCCACATTTACAATTCGAATG
AAATTACAACGATAGAATAA

Upstream 100 bases:

>100_bases
TACGCATAGTGCTTTACTTGTGGTAAAATGAGAGAAGGAAACTCCTAAAAGTTGTATGTTACTGAAGGAGAGAAAAGTAA
AATAAGAGGTATATGCATAT

Downstream 100 bases:

>100_bases
ATAAAACCGAGAAGAAAAGCTTCTCGGTTTTATTTATTTGTACTAATTTTCCCAGGCGCTCGCTCGTATTGATGCGGTTC
TTCTAACTCAAAGCCAAGTT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNKRTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEYKEFFAVDDVFSCLGTTIKKA
KTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSFFFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFR
FGERMAEKLSRIIPFIFKGAFKKYKPISAKDVAKGMYITALREESGIHIYNSNEITTIE

Sequences:

>Translated_219_residues
MNKRTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEYKEFFAVDDVFSCLGTTIKKA
KTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSFFFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFR
FGERMAEKLSRIIPFIFKGAFKKYKPISAKDVAKGMYITALREESGIHIYNSNEITTIE
>Mature_219_residues
MNKRTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEYKEFFAVDDVFSCLGTTIKKA
KTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSFFFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFR
FGERMAEKLSRIIPFIFKGAFKKYKPISAKDVAKGMYITALREESGIHIYNSNEITTIE

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=178, Percent_Identity=35.9550561797753, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI148728168, Length=178, Percent_Identity=35.9550561797753, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI148728164, Length=178, Percent_Identity=35.9550561797753, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI148728166, Length=178, Percent_Identity=35.9550561797753, Blast_Score=107, Evalue=8e-24,
Organism=Escherichia coli, GI87082218, Length=213, Percent_Identity=35.2112676056338, Blast_Score=119, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71983631, Length=214, Percent_Identity=37.3831775700935, Blast_Score=126, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 25153; Mature: 25153

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEY
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
KEFFAVDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCHHEEEEECCCCCCH
SFFFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFRFGERMAEKLSRIIPFIFKGA
HEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FKKYKPISAKDVAKGMYITALREESGIHIYNSNEITTIE
HHHCCCCCHHHHHCCCEEEEEECCCCEEEECCCCEEEEC
>Mature Secondary Structure
MNKRTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEY
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
KEFFAVDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCHHEEEEECCCCCCH
SFFFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFRFGERMAEKLSRIIPFIFKGA
HEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FKKYKPISAKDVAKGMYITALREESGIHIYNSNEITTIE
HHHCCCCCHHHHHCCCEEEEEECCCCEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]