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The map label for this gene is yodJ [H]

Identifier: 52143360

GI number: 52143360

Start: 1996670

End: 1997410

Strand: Direct

Name: yodJ [H]

Synonym: BCZK1875

Alternate gene names: 52143360

Gene position: 1996670-1997410 (Clockwise)

Preceding gene: 52143362

Following gene: 52143361

Centisome position: 37.67

GC content: 39.27

Gene sequence:

>741_bases
ATGAAAAAAAGATGGATACTACTTGGTATCGTAGCGATGATACTCATTGTTGGAGTAGCAGGAATTAATTATAAAATGTA
TAAGGATAAGCAGGCGCGCGAGGTAAATGTAAATAACATATTTCCGAAAGCGAAAGAAACGATTGCGAATATGGATGGGG
ATATTGCGGTAATTAGTAATCCGAATTCGATGCTTGTGCTTGTGAATAAAAGTAGGCGTTTACCAGATGGGTATAAACCG
CCAGATTTAGTTATTCCGAAAGTGCGCTACTCAAGTGAAGGTGATCAAGAAAAGAAAAAAATGAGGAAAGAGGCAGCTGG
TGCGCTTGAGGAAATGTTTCAGCAAGCGGATAAGGAGCGTGTTTTCTTATTTGCAGTTTCTGGATTTAGATCTTTTGATC
GACAAAAAGCGTTAAATACAATGTATAAAAAACAAGATGGAGAAGCAAAAACAGCGATGTCGAGTGCAGTTCCTGGAACG
AGTGAACATCAAACGGGGCTTGCTATGGATATTACATCGCAATCTGCTAGGTTTCAGTTAGAGACAATTTTTGGTGAAAC
GAAAGAAGGGCAGTGGCTTTCTGAAAATGCCCATAAATTTGGTTTTGTCATTCGATATACGAAAGAGAAGGAGTCGCTTA
CTGGTTATCGATATGAACCATGGCATGTGAGGTATGTGGGGAATCCACAAGCTACATATTTATATGAAAATCAACTCACG
CTTGAAGAAGTAGCAGAGTGA

Upstream 100 bases:

>100_bases
GATTTGAGAAAGAAGGTGTCAAAAGAGCTTCTCTTATTATCGATGGAGAGAACATCGATGAGTATGAAATGGCCAAATTA
TTAAAATAAGAGGTCGTTAT

Downstream 100 bases:

>100_bases
AAGATTGAGGGGAGAGAAGGGTTATGACGGTGTTATATAATAAAAAAGTACACGCATATGTGACAAGAGAAAAAGAAGGA
GTTATGCAACTGCTTGTTTT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSARFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE

Sequences:

>Translated_246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSARFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE
>Mature_246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSARFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 28035; Mature: 28035

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSMLVLVNKSRRLPDGYKPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSARFQL
EEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC
LEEVAE
HHHHCC
>Mature Secondary Structure
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSMLVLVNKSRRLPDGYKPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSARFQL
EEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC
LEEVAE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]