| Definition | Bacillus cereus E33L, complete genome. |
|---|---|
| Accession | NC_006274 |
| Length | 5,300,915 |
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The map label for this gene is helD [H]
Identifier: 52142701
GI number: 52142701
Start: 2661507
End: 2663576
Strand: Reverse
Name: helD [H]
Synonym: BCZK2539
Alternate gene names: 52142701
Gene position: 2663576-2661507 (Counterclockwise)
Preceding gene: 52142699
Following gene: 52142702
Centisome position: 50.25
GC content: 34.88
Gene sequence:
>2070_bases ATGAACAACATTTTTGAAGAAGAGTTACAAAAAATGAAAGATACATTACGTACGATGGATGATCAATTAGAACAGCTTGA AAAAATCCCAGTTTATTATGGCGATGATTTTAAAGAGCAAATTCTTGAAAGTATGAGGGAGTCTAATAGACAAAACTTAC GTATTGGTGTACAAGAACCGTACTTTGGAAGATTAGATTTTCAAGAGGATGGCAAGGAAGAAGTTATGCCGATCTACATC GGTAAGGTAGGTGTTTCAGATAAAGATACGATGAAACCAATTGTAATTGATTGGCGGGCACCTGTCGCAAGTATGTTTTA TTCATTTACCGGCGGTGATGAATTAGCGTTTTATCAATCACCAGACGGATTAGTAGAAGGTGATGTTTATTTAAAGCGAA ACATCTCTATTCGAAAAAGAGAATTAGAACGTGTTGTTGATACATATGTAAAAGGAAATGAAGATGTCTCGCATGCCGAT GATTTTCTTCTATATCGATTAGGTGAGAATAAAGATAATAAACTAAAGGATATTGTTTCGACGATACAATCGGAGCAAAA TGATATTATTCGTGCGGAAAGAAACTTACCATTACTTATTCAAGGGGTTGCAGGAAGCGGTAAAACAACAATCGCTTTAC ATCGCCTTGCTTTTTTAATTTATGAATATCGTGAGCAATTAGAAGCGGAGCGAATGATTGTTTTCGCTCCGAATAGTCTG TTTTTAGACTATATTTCGAGTGTACTTCCTGAATTAGGTGTAGGGAATATTAGTCAAACAACATTTCTGGACTGGGCATT ACGTACATTAGATGATTCGGTGAAACTGAAGCAGACAGAAGAAAAGCTGAAAGAAGCATTTTCTATTAATCGTGATGAAA GAAAGGTTATGCTTGGTAAATTGAAAGGTACGCTAGAATTTAAGTCCTTTATTGAAGAGCAAATGGTTCAAATTGAAAAA GAACTAGTACCAACAAGTAATTTTGAGGCATGGGATAAAGCTGTTATTCCAGTGGAAGATATTAAAAAGTGGATGCAAGT CGAATATAAACACTATCCATTAAAGAAAAGAAGAGAACGTTTAGTCGGCCGAATGAAACGCTGGATTGAAATTGAACTGA AAAAGTATGGAGAAACAAACGAGAAAAAATTACTCAAAAAAGAAGCAACTAAAAGACTGAACACTTACATGAAGTTTTGG CCGAAAATGAGTGCTCTTTCACTGTATAGTTCAATATTAAAAAGTAAGGAAATACTCGAAGTATTACCTGAAGAACTTGT TAAAGAAACAGAAAAGAATGGTCGTAAAAAAGAAGTGTATGTAGAAGATTTACCTGCTTTAATATACATACATCACCGCA TCACAGGTATTGAAATCGGACAGAAATTCCATCACGTCGTTATCGATGAAGCGCAAGATTTCTCGCCTTTTCAAGTTTAT GTATTGAAAGAAATTACACTAGGTAATTCTTTTACTATATTAGGTGATTTATCTCAGGCGATTTATGATTATCAAGGAAT TGAAGATTGGAGTGCGTTTAAGGAAGTATTCCAAGAAACAGGTTATTATGAACTGACGAGAAGTTATCGTTCTACAAAAG AAATTATTGAATTCGCAAATGAGATAATAAAAAATGCAGAAATTCCTGTAGGGCTTGCAATGCCAGTTTTCCGTAGTGGA GAAGAAGTAAAAGTAATTCATACAGAAGATCAGTTTACTGAAATTTTGAAGACATTAAAACAGCTACAAAATGCAGATGT GAAAACAATTGCGGTAATCGGAAGAACAGACGATGAATGCCGCGATATGTATGAGAAATTAACGAATGCAGGATTGACTG TAAACGTCATTGAAGCAGATCAAAGTAAATATGAAGGGGGCATTTCGGTAGTACCTGTATACTTAGCGAAAGGGTTAGAA TTTGATGCTGTTCTACTCATTGATGTCGATGAAGAACATTATAAAAATACGAAACACGATGCGAAGTTATTATATGTCGG ATGTACAAGGTCGCTTCATGATTTATGGATTTTCCATAGCGGGGAAGCATCTCCATTAATTAAGAAGTAA
Upstream 100 bases:
>100_bases TTTTCAGAAAAAACAAATTAAGTCCTTGACTTTATAATTGGATTTTTAATACAATTATATTTCGACTGAAAAATTAGAAC GGACAGGAGGGAATCATCAA
Downstream 100 bases:
>100_bases AAATTCAAATGGTTTTTTAATAGAGAAGCATCTTATTTTATAAAAATATAGGGGACATGATAATGATTACAAAAGTAATA ACAAAAAGAAATTGGGAAAT
Product: UvrD/Rep helicase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MNNIFEEELQKMKDTLRTMDDQLEQLEKIPVYYGDDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYI GKVGVSDKDTMKPIVIDWRAPVASMFYSFTGGDELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHAD DFLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL FLDYISSVLPELGVGNISQTTFLDWALRTLDDSVKLKQTEEKLKEAFSINRDERKVMLGKLKGTLEFKSFIEEQMVQIEK ELVPTSNFEAWDKAVIPVEDIKKWMQVEYKHYPLKKRRERLVGRMKRWIEIELKKYGETNEKKLLKKEATKRLNTYMKFW PKMSALSLYSSILKSKEILEVLPEELVKETEKNGRKKEVYVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY VLKEITLGNSFTILGDLSQAIYDYQGIEDWSAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPVFRSG EEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRTDDECRDMYEKLTNAGLTVNVIEADQSKYEGGISVVPVYLAKGLE FDAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWIFHSGEASPLIKK
Sequences:
>Translated_689_residues MNNIFEEELQKMKDTLRTMDDQLEQLEKIPVYYGDDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYI GKVGVSDKDTMKPIVIDWRAPVASMFYSFTGGDELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHAD DFLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL FLDYISSVLPELGVGNISQTTFLDWALRTLDDSVKLKQTEEKLKEAFSINRDERKVMLGKLKGTLEFKSFIEEQMVQIEK ELVPTSNFEAWDKAVIPVEDIKKWMQVEYKHYPLKKRRERLVGRMKRWIEIELKKYGETNEKKLLKKEATKRLNTYMKFW PKMSALSLYSSILKSKEILEVLPEELVKETEKNGRKKEVYVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY VLKEITLGNSFTILGDLSQAIYDYQGIEDWSAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPVFRSG EEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRTDDECRDMYEKLTNAGLTVNVIEADQSKYEGGISVVPVYLAKGLE FDAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWIFHSGEASPLIKK >Mature_689_residues MNNIFEEELQKMKDTLRTMDDQLEQLEKIPVYYGDDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYI GKVGVSDKDTMKPIVIDWRAPVASMFYSFTGGDELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHAD DFLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL FLDYISSVLPELGVGNISQTTFLDWALRTLDDSVKLKQTEEKLKEAFSINRDERKVMLGKLKGTLEFKSFIEEQMVQIEK ELVPTSNFEAWDKAVIPVEDIKKWMQVEYKHYPLKKRRERLVGRMKRWIEIELKKYGETNEKKLLKKEATKRLNTYMKFW PKMSALSLYSSILKSKEILEVLPEELVKETEKNGRKKEVYVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY VLKEITLGNSFTILGDLSQAIYDYQGIEDWSAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPVFRSG EEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRTDDECRDMYEKLTNAGLTVNVIEADQSKYEGGISVVPVYLAKGLE FDAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWIFHSGEASPLIKK
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=524, Percent_Identity=24.4274809160305, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 79913; Mature: 79913
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNIFEEELQKMKDTLRTMDDQLEQLEKIPVYYGDDFKEQILESMRESNRQNLRIGVQEP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCEEEECCCC YFGRLDFQEDGKEEVMPIYIGKVGVSDKDTMKPIVIDWRAPVASMFYSFTGGDELAFYQS CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEC PDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHADDFLLYRLGENKDNKLKDIVS CCCCEECCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCHHHHHHHH TIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL HHHCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH FLDYISSVLPELGVGNISQTTFLDWALRTLDDSVKLKQTEEKLKEAFSINRDERKVMLGK HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH LKGTLEFKSFIEEQMVQIEKELVPTSNFEAWDKAVIPVEDIKKWMQVEYKHYPLKKRRER HHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH LVGRMKRWIEIELKKYGETNEKKLLKKEATKRLNTYMKFWPKMSALSLYSSILKSKEILE HHHHHHHHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VLPEELVKETEKNGRKKEVYVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY HHHHHHHHHHHHCCCCCEEEHHCCCEEEEEEHHCCHHHHHHHHHHHEECCCCCCCCEEEE VLKEITLGNSFTILGDLSQAIYDYQGIEDWSAFKEVFQETGYYELTRSYRSTKEIIEFAN EEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIIKNAEIPVGLAMPVFRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRTDDEC HHHHCCCCCCCEECHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH RDMYEKLTNAGLTVNVIEADQSKYEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKNTKHD HHHHHHHHCCCCEEEEEECCCHHHCCCCEEEHHHHHCCCCCCEEEEEECCHHHCCCCCCC AKLLYVGCTRSLHDLWIFHSGEASPLIKK CEEEEEECCCCHHHEEEEECCCCCCCCCC >Mature Secondary Structure MNNIFEEELQKMKDTLRTMDDQLEQLEKIPVYYGDDFKEQILESMRESNRQNLRIGVQEP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCEEEECCCC YFGRLDFQEDGKEEVMPIYIGKVGVSDKDTMKPIVIDWRAPVASMFYSFTGGDELAFYQS CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEC PDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHADDFLLYRLGENKDNKLKDIVS CCCCEECCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCHHHHHHHH TIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL HHHCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH FLDYISSVLPELGVGNISQTTFLDWALRTLDDSVKLKQTEEKLKEAFSINRDERKVMLGK HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH LKGTLEFKSFIEEQMVQIEKELVPTSNFEAWDKAVIPVEDIKKWMQVEYKHYPLKKRRER HHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH LVGRMKRWIEIELKKYGETNEKKLLKKEATKRLNTYMKFWPKMSALSLYSSILKSKEILE HHHHHHHHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VLPEELVKETEKNGRKKEVYVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY HHHHHHHHHHHHCCCCCEEEHHCCCEEEEEEHHCCHHHHHHHHHHHEECCCCCCCCEEEE VLKEITLGNSFTILGDLSQAIYDYQGIEDWSAFKEVFQETGYYELTRSYRSTKEIIEFAN EEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIIKNAEIPVGLAMPVFRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRTDDEC HHHHCCCCCCCEECHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH RDMYEKLTNAGLTVNVIEADQSKYEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKNTKHD HHHHHHHHCCCCEEEEEECCCHHHCCCCEEEHHHHHCCCCCCEEEEEECCHHHCCCCCCC AKLLYVGCTRSLHDLWIFHSGEASPLIKK CEEEEEECCCCHHHEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]