Click here to switch to the map view.

The map label for this gene is lsrC [H]

Identifier: 52142547

GI number: 52142547

Start: 2813406

End: 2814359

Strand: Reverse

Name: lsrC [H]

Synonym: BCZK2695

Alternate gene names: 52142547

Gene position: 2814359-2813406 (Counterclockwise)

Preceding gene: 52142546

Following gene: 52142549

Centisome position: 53.09

GC content: 36.37

Gene sequence:

>954_bases
ATGAAACGCATGCTAAAAATGCACGAAACGTCTATCATAACGTTACTACTAATTTATATAGCTATTGTAGGAATGATAAA
TCCTAGTTTTATTCAATTTAACTCGTTATCTTTAATGGTGAAATCAAGCGTTATTTTAGTCGTGTTAGCAATTGGCCAAT
CGTTCGTCTTATTTACGAAAAATATAGATGTATCAGTTGGTTCAAGCATGGGGTTAAGTGCAGCAGTTTGCGGAATGTTG
CTAACGAATGAATATAGTGCATCCTTGTCGATATTTGCTGCTATTACACTTGGCGCTATTATCGGTTTCGTAAACGGGAT
GGGCGTTGCGAAGTTTCGAGTACCAGCCATTATTATGACATTAGGCATGTTAGGAATTATTAGAGGTGCCATGTTAATTT
TCACAGGCGGGAAGTGGATTGAAGATATTCCAAACGATTTTAAGCAGCTGTCATCTATCGTCATTCTTGGTTTACCTATA
ACTGTATGGTTCGTTCTTATTATTTTACTACTACTATACTTCTTTTTAAGGAAAGTGCCATTTGGAAGATACTTTTATGC
GGTAGGTGATAATGAAGATGGCGCGAGACTTATTGGTATACCTGTTAATAAAGTGAAGATATGTGCGTTTATGATTTCAG
GCATAAGTGCTGCGCTCGCTGGTTGCATATTTGTTATGAATATCGGGTTCATTCCAAATCAAACTGGTACAGGATTAGAA
TTACAAGTAATCGCAGCCGCTGTACTAGGGGGCATTCATTTAAAAGGAGGAACAGGATCTTTATTTGGAGCTGCATTAGG
AGCATTCTTTTTAGAAACAATAAGCAGTTCACTCGTCTTTCTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTT
TTTTATTATTACTTATCATCATACTGGATAGTGTTATGAAAAAGTGGAAGGCAGAAAGGAGGATGAATCTATGA

Upstream 100 bases:

>100_bases
GTGTATATGTAATGAGAAATGGACGATTTGTTTCTCATATGGAAAAAGAACAACTGAGTGTGAATGAAGTTACACGCCTT
GCATACGGAGGTGTAGCGGA

Downstream 100 bases:

>100_bases
AGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGAATTCATTCTCTTTAGTTTAATCAATAGTGAT
TTCTTAAATATTAGTAATCT

Product: sugar ABC transporter, permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKRMLKMHETSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFMISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Sequences:

>Translated_317_residues
MKRMLKMHETSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFMISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL
>Mature_317_residues
MKRMLKMHETSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFMISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=47.5352112676056, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=35.7377049180328, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI145693152, Length=282, Percent_Identity=32.9787234042553, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=29.0220820189274, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=29.3918918918919, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=28.75, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789992, Length=346, Percent_Identity=28.6127167630058, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=27.5541795665635, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=28.2945736434109, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=26.2626262626263, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34158; Mature: 34158

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMLKMHETSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPVNKVKICAFMISGISAALAGCIFVMNIGFIPNQTGTGLE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRMLKMHETSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPVNKVKICAFMISGISAALAGCIFVMNIGFIPNQTGTGLE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]