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The map label for this gene is ycgF [H]

Identifier: 52142487

GI number: 52142487

Start: 2874842

End: 2875480

Strand: Reverse

Name: ycgF [H]

Synonym: BCZK2754

Alternate gene names: 52142487

Gene position: 2875480-2874842 (Counterclockwise)

Preceding gene: 52142488

Following gene: 52142489

Centisome position: 54.24

GC content: 31.61

Gene sequence:

>639_bases
ATGATTAGCATGATATTCAGTTATATATTATTAGGGATTTCATTGTCTGCACCAGTCGGTCCGATTAATGTTGCTCAAAT
AAATAAAGGAATAAAAAATGGTTTTTTGAGTGCATGGTTAGTAGGAGTCGGGGCGATGTCAGCAGATGTTGTAATGATGT
TTTTAATTTACTTTGGTATTTCGACGTATTTAACAACTCCAGTTGCCCAGCTTTGCATTTGGATTTTTGGTTTTGTAACG
ATGATTTATTTGGGCTATGAAAGTATGAAAGAAGCTACTAAACAAGTTCAATATATTTCATCAGGTGAAAAAGAACATCC
TTTAAAATCTTTTCTATCGGGGTTTGCTATCGCAATTTCAAATCCATTAAATATTATTTTTTGGATAGGGATATATGGAT
CAGTTCTAACTAGTGCTATGAATACTATTGGAAAAGAACAAGCTTTATGGTATAGTGCAGCCATTTTTGCTGGGATTATG
CTTTGGGATATATTTATGGCTACATCTATTCATTTTGGTAGAAGATTTATTAATCATACAGTAATGAAATGGATTTCTAT
AGTAGCAGGAATTGTTTTAATTATGTTTGGAATATATTTTGGCTATGAGGCAGTAAAAAGAATTGAAAGATTATTGTGA

Upstream 100 bases:

>100_bases
ATATCGTATAAACAATATACACATGAGCCAATAGTAGATTATGAAACAGATAGAAAAATTAGAGAAAGGTTTAAATGTCC
TATTACGGGGTTGAAGAAAA

Downstream 100 bases:

>100_bases
AAATATTGATAATTAGAGTGGGTAGTTATTTTTTAGAACTTTATTCATAGCGAACCTTTTGGTTTTTGAATTTGTTAATC
GATGAGTATAGGCTAATTCC

Product: amino acid transporter LysE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MISMIFSYILLGISLSAPVGPINVAQINKGIKNGFLSAWLVGVGAMSADVVMMFLIYFGISTYLTTPVAQLCIWIFGFVT
MIYLGYESMKEATKQVQYISSGEKEHPLKSFLSGFAIAISNPLNIIFWIGIYGSVLTSAMNTIGKEQALWYSAAIFAGIM
LWDIFMATSIHFGRRFINHTVMKWISIVAGIVLIMFGIYFGYEAVKRIERLL

Sequences:

>Translated_212_residues
MISMIFSYILLGISLSAPVGPINVAQINKGIKNGFLSAWLVGVGAMSADVVMMFLIYFGISTYLTTPVAQLCIWIFGFVT
MIYLGYESMKEATKQVQYISSGEKEHPLKSFLSGFAIAISNPLNIIFWIGIYGSVLTSAMNTIGKEQALWYSAAIFAGIM
LWDIFMATSIHFGRRFINHTVMKWISIVAGIVLIMFGIYFGYEAVKRIERLL
>Mature_212_residues
MISMIFSYILLGISLSAPVGPINVAQINKGIKNGFLSAWLVGVGAMSADVVMMFLIYFGISTYLTTPVAQLCIWIFGFVT
MIYLGYESMKEATKQVQYISSGEKEHPLKSFLSGFAIAISNPLNIIFWIGIYGSVLTSAMNTIGKEQALWYSAAIFAGIM
LWDIFMATSIHFGRRFINHTVMKWISIVAGIVLIMFGIYFGYEAVKRIERLL

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 23604; Mature: 23604

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISMIFSYILLGISLSAPVGPINVAQINKGIKNGFLSAWLVGVGAMSADVVMMFLIYFGI
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STYLTTPVAQLCIWIFGFVTMIYLGYESMKEATKQVQYISSGEKEHPLKSFLSGFAIAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
NPLNIIFWIGIYGSVLTSAMNTIGKEQALWYSAAIFAGIMLWDIFMATSIHFGRRFINHT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMKWISIVAGIVLIMFGIYFGYEAVKRIERLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MISMIFSYILLGISLSAPVGPINVAQINKGIKNGFLSAWLVGVGAMSADVVMMFLIYFGI
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STYLTTPVAQLCIWIFGFVTMIYLGYESMKEATKQVQYISSGEKEHPLKSFLSGFAIAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
NPLNIIFWIGIYGSVLTSAMNTIGKEQALWYSAAIFAGIMLWDIFMATSIHFGRRFINHT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMKWISIVAGIVLIMFGIYFGYEAVKRIERLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]