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The map label for this gene is araC [C]

Identifier: 52142465

GI number: 52142465

Start: 2894952

End: 2895842

Strand: Reverse

Name: araC [C]

Synonym: BCZK2776

Alternate gene names: 52142465

Gene position: 2895842-2894952 (Counterclockwise)

Preceding gene: 52142466

Following gene: 52142467

Centisome position: 54.63

GC content: 33.56

Gene sequence:

>891_bases
ATGGAGAATAAACAAAGTAGAAATGAGTATTTACAGTGCATATACAAAGTACAAAATTATATAGAATTACACATAAATGA
TTCACTTTCAATTGAAGAGTTAGCGGATATAGCAGGATTTTCAAAGTATCATTTTCATAGAATTTTTAAAGGGATAGTAG
ATGAACCATTATCTCGGTATGTAAACCGATTGAAACTGGAAAGGGCAACAAACCTTCTTACATACCGTTCGGATATGACG
ATTACTGATATCGCTTACCATTTTGGCTTCACAGATTCAGCAGTTTTCTCCCGTACATTTAAAAATTATTATGGAGTAAG
TCCGTCTCAATATCGAAACGACAATAGCAAGAATTGCAAAGACGTAAGAAGAACTTCTCAATACAATGAATGTAAGAAGG
TTCGAGGGAATGTTGAAATTGTAACAGCAGACAATATAAACGTCGCATACATAAGGCATATCGGTACATATGAAGAGTTA
ACTATAGCTTTTCCGAAAATGATAAAAAAACTATTTCAATACGCAGTTGAGCAAAACTATCATGTATTTGAGGATACGAA
AGTATTAACCATTTACCACGATCATCATGAATTTACGGAGGACAATCATTTAAGAACAAGTTTATGTATAACAATTCCAG
ATAAATCCGCAGTCAAAACAAGTGACGTAGGAATAATGGTAATACCCTCAGGGAAATATGCGGTAGGTCATTTTGAAATA
CAACAAGCTGAATATAAAGGGGCGTGGGATTTTTTATACGGTGAATGGTTACCAAATAGCGGATATAAACCGAGAGACTC
ATATCCTTTTGAAGTATATAGAAATGATCCAAAGCAGCATCCAAAGCATAAACATATAGTTGATATATATGTACCTATCG
AACCTTTTTAA

Upstream 100 bases:

>100_bases
AAATTATGACGGGAATGGTGGTAGTAGAGTTTTATTTTTGAAACATGTGTAAAAGTAGGCTAGCACAAAGTTAGCCTTTT
TGTTGTGAGGAGATAGAAGT

Downstream 100 bases:

>100_bases
TTATAGGTTAAAGGGGAAAGAATAATGAAAACTGCTGAAAAGTTAAATCAGATTATAAAAGAAGAATATGAAAATATGAA
TGGTATGTTAGTAGTGCAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MENKQSRNEYLQCIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVTADNINVAYIRHIGTYEEL
TIAFPKMIKKLFQYAVEQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPDKSAVKTSDVGIMVIPSGKYAVGHFEI
QQAEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Sequences:

>Translated_296_residues
MENKQSRNEYLQCIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVTADNINVAYIRHIGTYEEL
TIAFPKMIKKLFQYAVEQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPDKSAVKTSDVGIMVIPSGKYAVGHFEI
QQAEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
>Mature_296_residues
MENKQSRNEYLQCIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVTADNINVAYIRHIGTYEEL
TIAFPKMIKKLFQYAVEQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPDKSAVKTSDVGIMVIPSGKYAVGHFEI
QQAEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Specific function: Unknown

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=109, Percent_Identity=32.1100917431193, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34829; Mature: 34829

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKQSRNEYLQCIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
VNRLKLERATNLLTYRSDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHEEEECCCCEEEHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVTADNINVAYIRHIGTYEELTIAFPKMIKKLFQYAVEQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
HVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPDKSAVKTSDVGIMVIPSGKYAVGHFEI
EEECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEECCCEEEEECCCCEEEEEEEE
QQAEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
EECCCCCCEEEHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MENKQSRNEYLQCIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
VNRLKLERATNLLTYRSDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHEEEECCCCEEEHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVTADNINVAYIRHIGTYEELTIAFPKMIKKLFQYAVEQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
HVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPDKSAVKTSDVGIMVIPSGKYAVGHFEI
EEECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEECCCEEEEECCCCEEEEEEEE
QQAEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
EECCCCCCEEEHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]