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The map label for this gene is yfnB [H]

Identifier: 52142203

GI number: 52142203

Start: 3169056

End: 3169766

Strand: Reverse

Name: yfnB [H]

Synonym: BCZK3039

Alternate gene names: 52142203

Gene position: 3169766-3169056 (Counterclockwise)

Preceding gene: 52142201

Following gene: 52142205

Centisome position: 59.8

GC content: 34.88

Gene sequence:

>711_bases
ATGAAATACAAAGTTATATTATTCGACGTAGACGATACATTATTAGATTTCCCTGAAACGGAAAAACACGCACTGCATAA
TGCGTTTGTACAGTTCGGTATGCCTACAGGGTATACTGATTATCTTGCAAGTTATAAAGAGATTAGTAATGGACTATGGA
GAGATTTAGAAAATAAAATGATTACGCTAAGTGAATTAGCGGTAGATCGATTTAGACAATTATTTGCACTGCATAATATA
GAAGTAGATGCGCAGCAATTTAGTGACGTATATCTTGAAAACTTAGGGAAAGAAGTACATCTTATTGAAGGTGCAGTGCA
ATTATGTGAGAATCTACAAGATTGCAAGCTAGGTATCATTACGAATGGATATACGAAGGTACAACAATCTAGAATTGGAA
ATTCGCCTTTACGTAATTTTTTTGAACATATTATTATTTCTGAAGAGGTTGGCCATCAAAAACCAGCACGTGAGATTTTT
GATTATGCGTTTGAAAAGTTTGGAATTACGGATAAATCAAGTGTACTAATGGTTGGAGATTCGCTCACTTCTGATATGAG
AGGCGGAGAAGATTACGGCATTGATACATGTTGGTATAATCCGAGTTTGAAAGAGAATAAGGCAAGTGTTAAGCCGACTT
ATGAAGTGGAGAGTCTGCTGCAAATTTTAGAACTTGTAGAAGTGGCTAAAGAAAAAGTAGTTTCATTTTAA

Upstream 100 bases:

>100_bases
TATTCTATAAAGAGCGGGTTAAAGCTCTTCATCAAGAAATATATAAAAACTTATAAGCAATGAGAACGAAGCTTTTAAAA
TAGGAATTAAGGAGAACATC

Downstream 100 bases:

>100_bases
TCGTGTCGATATTTGTTGATAAGTCGATATTCTTTGTCGAATCGTCGATATATTTTAAGTTACGGTAGATATATTTGAAA
AATCGTTGATATATTTTGAA

Product: HAD superfamily hydrolase

Products: (R)-2-hydroxyacid; halide

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAKEKVVSF

Sequences:

>Translated_236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAKEKVVSF
>Mature_236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAKEKVVSF

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family [H]

Homologues:

Organism=Escherichia coli, GI1790833, Length=227, Percent_Identity=35.2422907488987, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: 3.8.1.2

Molecular weight: Translated: 26979; Mature: 26979

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKM
CCEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
ITLSELAVDRFRQLFALHNIEVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGII
EHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCEEEEE
TNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIFDYAFEKFGITDKSSVLMVGD
ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
SLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAKEKVVSF
CHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKM
CCEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
ITLSELAVDRFRQLFALHNIEVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGII
EHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCEEEEE
TNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIFDYAFEKFGITDKSSVLMVGD
ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
SLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAKEKVVSF
CHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (S)-2-haloacid; H2O

Specific reaction: (S)-2-haloacid + H2O = (R)-2-hydroxyacid + halide

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]