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The map label for this gene is yddE [C]

Identifier: 52142118

GI number: 52142118

Start: 3253199

End: 3254098

Strand: Reverse

Name: yddE [C]

Synonym: BCZK3123

Alternate gene names: 52142118

Gene position: 3254098-3253199 (Counterclockwise)

Preceding gene: 52142119

Following gene: 52142121

Centisome position: 61.39

GC content: 35.89

Gene sequence:

>900_bases
ATGAAAACTATAAACGTATTTCATTATGACGCATTTACAAATAAACCGAATATGGGGAATCCAGCAGGTATTGTATTAGA
TGCAGATGGATTAACAGAAGAGGAAATGCAAATTATTGCTGAAAAAGTTGGATATAACGAAACAACTTTTGTTCTTTCCT
CAGAAGTAGGAGATATAAGAATGCGCTATTTTACACCTGGTTTTGAAATGGATTTATGTGGTCATGGGACAGTAGGGACG
ATATACGCCTTGCGCGAAAAAGGTTTATTAGAAGAGAAAAGTAACCTTACGATTGAAACGAAGGCAGGGATTTTACCAAT
ACAAATAGGTGTAAATGAAAATGGAGAAACCTTTATTAAAATGAGGCAGACAGCACCTCAGTTTAAAGATTTTGCAGGTT
CAAAAGAAGAATTAGCTCGTAGTATTGGTTTAGAAGTAAATGATTTAGATGTAAGTTTACCGATTGTATATGGAAGTACG
GGAAACTGGACCGTAATTGTACCGGTTAAAAATCTAGATGTATGTGAGAGAATGAAACCTAACAATGAGGTGTTTCCATC
GGTATTAAAAGAAATACCTAACGCTTCTATTCACCCAATTTGTCTAGAAACTTATGACGAAAAGGTACATATGCATGGGC
GTCATTTCTCATCAGCTTATGCTGGAACGATTGAAGATCCCGTGACAGGAACAGCTTCAGGTGTAATGGGAGCATATTAT
GCGACGTATGTGGAGAAAGATTTTGACCATGAAATGGAGTTAATCGTTGAACAAGGGCAAGAAATACATAAAGATGGTCG
TGTAACGGTATATATAACGAAAGATGTAGAAAGTGAGAAGTTACAAATAGATATTGCTGGAACAGCGGTATATGTGAAAG
AGTTTGAAGTTTTAATATAA

Upstream 100 bases:

>100_bases
ATGAAAAGATGCAGGGGATATTTTGGAGAAATAATTGTTCGTTGAAAACGGAGATAGGGCTTTATTATAAAATTTTTAAT
GAGGGTTAGGAGAAAAGAAA

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGAGGGGCATCCCCACTGATTATCAGCCCTCACCAATTGGGCTGCCCAACGAATAGCGGGATA
AAAAAGAAAGCCCGGCATAC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELARSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYITKDVESEKLQIDIAGTAVYVKEFEVLI

Sequences:

>Translated_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELARSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYITKDVESEKLQIDIAGTAVYVKEFEVLI
>Mature_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELARSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYITKDVESEKLQIDIAGTAVYVKEFEVLI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=33.7792642140468, Blast_Score=143, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6321818, Length=295, Percent_Identity=27.1186440677966, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33241; Mature: 33241

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHEEEEEHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEE
MRQTAPQFKDFAGSKEELARSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKP
EECCCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYITKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC
>Mature Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHEEEEEHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEE
MRQTAPQFKDFAGSKEELARSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKP
EECCCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYITKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]