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The map label for this gene is ywqM [H]

Identifier: 52142044

GI number: 52142044

Start: 3320867

End: 3321760

Strand: Reverse

Name: ywqM [H]

Synonym: BCZK3199

Alternate gene names: 52142044

Gene position: 3321760-3320867 (Counterclockwise)

Preceding gene: 52142041

Following gene: 52142046

Centisome position: 62.66

GC content: 35.12

Gene sequence:

>894_bases
ATGGAGATAAAACAGTTAATTACATTTAAAGTAGCGGCACATACTTTGAACTTTACACAAACTGCGAAGAAATTAAACTT
TGCTCAATCGAGCGTTACAGCGCAAATTAAAACGTTAGAAGCTGAGCTCGGTACACCGTTATTTGAAAGATTAGGGAAAC
GTCTTTTCTTAACTGAAGCAGGGAGGAAGTTTCAATTATATGCTGATAAGATGATTGGGCTTAGTAACGAAGCGAAAATG
GCTGTGAAAGATGATGAAGAAATAGCAGGTACGTTAATAATTGGTGCACAAGAAAGTCAATGTACATACAGACTGCCTTC
TATATTAAAGAGGTTTAAAATACAATTCCCAAAAATAAAACTTATATTTAAACCAGCGCATTCCAATAAAGATGCGAAGG
AACAATTGATGGAGGGAAAAGTAGATCTTGCATTTATTTTGGATGAGTGTAAAACAGAAGATGTTTTACATGTGGAACCA
CTTATGAAAGAAGAATTAAAAGTAGTAGCTGCTCCTATGCATCGTTTACTTGAACAACCTTCAGTTTCTATAAAAGATTT
AGAGAGTGAAACACTTTTACTAACAGAATTAGGCTGCTCGTATCGGACTTTATTTGAAGAGCTATTTCGCGGGGAAGATG
TATATCCAGCAAATAAAATTGAGTTTGTTAGTGTTGAAGCAATTAAACAATGTGTTATTGCAGATTTAGGCATAGCCGTT
TTACCAGCAATAGTAGTAGAAAAAGATATACGAGAGGGGACGATAAAAGAGTTACATTTAGAAAATACAATCTCTCCGAT
TTATACGCAAATCGCTTGGCATAAAGACAAATGGATGACAGTGCCACTGCGACAATTTATTGATGTAACGAGGGAGTTTT
TTGTAACGGATTAA

Upstream 100 bases:

>100_bases
TTGTCGATGCTCTTTATCATACAATATAAATATCAATAGACAAAGAGGATTATTTCGATGAAACCAATCGGAAATACCGA
TTAAAAAAGAGGGATGATAA

Downstream 100 bases:

>100_bases
GTGGAGAAATATTTATTTTATATAAAAGAAAAAATGGCAATTTTGTATAAAGAACCGATGCTTGAATATAACAAGTATCG
GTTCTTTTATGTTTTAAATA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEIKQLITFKVAAHTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
AVKDDEEIAGTLIIGAQESQCTYRLPSILKRFKIQFPKIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDVLHVEP
LMKEELKVVAAPMHRLLEQPSVSIKDLESETLLLTELGCSYRTLFEELFRGEDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTISPIYTQIAWHKDKWMTVPLRQFIDVTREFFVTD

Sequences:

>Translated_297_residues
MEIKQLITFKVAAHTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
AVKDDEEIAGTLIIGAQESQCTYRLPSILKRFKIQFPKIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDVLHVEP
LMKEELKVVAAPMHRLLEQPSVSIKDLESETLLLTELGCSYRTLFEELFRGEDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTISPIYTQIAWHKDKWMTVPLRQFIDVTREFFVTD
>Mature_297_residues
MEIKQLITFKVAAHTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
AVKDDEEIAGTLIIGAQESQCTYRLPSILKRFKIQFPKIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDVLHVEP
LMKEELKVVAAPMHRLLEQPSVSIKDLESETLLLTELGCSYRTLFEELFRGEDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTISPIYTQIAWHKDKWMTVPLRQFIDVTREFFVTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=297, Percent_Identity=27.6094276094276, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=29.0657439446367, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=28.3737024221453, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787530, Length=296, Percent_Identity=24.3243243243243, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790262, Length=258, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=24.0282685512367, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790399, Length=264, Percent_Identity=28.030303030303, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790208, Length=257, Percent_Identity=26.4591439688716, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=24.5733788395904, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=24.8299319727891, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=24.5136186770428, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=25.4180602006689, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=26.4822134387352, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=247, Percent_Identity=21.0526315789474, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=23.2931726907631, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788297, Length=231, Percent_Identity=24.6753246753247, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33815; Mature: 33815

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKQLITFKVAAHTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKMIGLSNEAKMAVKDDEEIAGTLIIGAQESQCTYRLPSILKRFKIQFPKIK
CCEEEEEHHHHHCCCCCCCEEECCCCHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDVLHVEPLMKEELKVVAAPMHRLLEQP
EEEECCCCCCHHHHHHHCCCCHHEEEEHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCC
SVSIKDLESETLLLTELGCSYRTLFEELFRGEDVYPANKIEFVSVEAIKQCVIADLGIAV
CCCCCCCCCCEEEEEHHCCHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDIREGTIKELHLENTISPIYTQIAWHKDKWMTVPLRQFIDVTREFFVTD
HHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKQLITFKVAAHTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKMIGLSNEAKMAVKDDEEIAGTLIIGAQESQCTYRLPSILKRFKIQFPKIK
CCEEEEEHHHHHCCCCCCCEEECCCCHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDVLHVEPLMKEELKVVAAPMHRLLEQP
EEEECCCCCCHHHHHHHCCCCHHEEEEHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCC
SVSIKDLESETLLLTELGCSYRTLFEELFRGEDVYPANKIEFVSVEAIKQCVIADLGIAV
CCCCCCCCCCEEEEEHHCCHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDIREGTIKELHLENTISPIYTQIAWHKDKWMTVPLRQFIDVTREFFVTD
HHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]