Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 52142009

GI number: 52142009

Start: 3354886

End: 3356016

Strand: Reverse

Name: yfbE [C]

Synonym: BCZK3235

Alternate gene names: 52142009

Gene position: 3356016-3354886 (Counterclockwise)

Preceding gene: 52142007

Following gene: 52142008

Centisome position: 63.31

GC content: 33.69

Gene sequence:

>1131_bases
ATGAATAGTATTCCTTTTTTACGTGCGTCAATTGTACCTGTGAATGAGTATTTAGGTGAATTGGAGAAAATGGATATATC
CCACATATATACGAATTATGGACCTTTAAATCAACACTTTGAAGAAAAAATTATGTCGGAATTTTTTGATAGTAAAGGGG
CTGTTACAACAGTAGCAAACGCAACACTCGGGTTAATGGCAGCAATTCAATTTAAAAAAAGAAAAAAAGGAAAATATGCG
CTCATGCCTAGCTTTACATTCCCAGCTACTCCATTGGCAGCTATTTGGTGTGGATTAGAACCTTATTTTATTGATGTTTC
ATTAGATGATTGGTGTATGGATAAAACGCTACTTTTAGATAAGATTGATGAATTAAAAGATGAAGTAGCGGTAGTGGTTC
CGTATGCAACATTCGGATCATGGATGGATTTAAAAGAATATGAAGAATTAGAAAGAAAAGGCATTCCAGTTGTTGTAGAC
GCGGCACCAGGGTTTGGGTTAATGCATGAGGGTATACATTACGGTCAGAATTTTAGTGGAATGATGGTATATAGCTTTCA
TGCAACAAAGCCTTTCGGAATTGGTGAAGGTGGTATGATATATAGCAATAATGAAGAAGAGATAAATCAAATAAAAAGAA
TGGGTAATTTTGGATTTGATCATAATCGTGAATGTACGATGATGGGGTTTAACTGCAAAATGACTGAGTATGCAGCAGCT
ATTGGAATCGCAACGATGAATAAATGGAATGAAAAAGTGCAAGAACGAAATCGTATCTCCGAATGGTATACACAGTTATT
ACAAAGTACAGGATTAATGAAAAAAGGATGGGAAGTTCAAAAGACAGAAGCAGTTATTCATCAATTTATGCCTATTCTCT
GCCCAGAAAAAATTCACAATACAGAAGTAATAGAAGTATTGAAAAAGCAAAATATAGAAGCTAGATTATATTTTTCACCA
TCTTGTCACCAACAAGATTTCTTTAAACAATATAAATCTACAGATTTAACAAATACAAATAAAATAGCAAAACAAATAAT
TAGTCTACCTTTATGGGAAGGAATGACGCAAGAAATAGTGGAGCAAATTATAATGTGTTTAATGCAGAAGGTGGTGTCAA
CAGATGAATAG

Upstream 100 bases:

>100_bases
ATAGCTGAGAAACAAGGAATGAAAATTGCTAGGAAATTTGGATTATCTAAAACGGATATGCTGTATATTGTCCGAAAATG
ATAGAAAGGAATAGAAAAAT

Downstream 100 bases:

>100_bases
TTTTTATAGTCAAGAAGAGCTAAAGAAAATTGGATTTTTATCTGTTGGGAAAAATGTATTGATTAGTAAAAAAGCAAGTA
TATATAATCCAGGTGTTATA

Product: degT/dnrJ/eryC1/strS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNSIPFLRASIVPVNEYLGELEKMDISHIYTNYGPLNQHFEEKIMSEFFDSKGAVTTVANATLGLMAAIQFKKRKKGKYA
LMPSFTFPATPLAAIWCGLEPYFIDVSLDDWCMDKTLLLDKIDELKDEVAVVVPYATFGSWMDLKEYEELERKGIPVVVD
AAPGFGLMHEGIHYGQNFSGMMVYSFHATKPFGIGEGGMIYSNNEEEINQIKRMGNFGFDHNRECTMMGFNCKMTEYAAA
IGIATMNKWNEKVQERNRISEWYTQLLQSTGLMKKGWEVQKTEAVIHQFMPILCPEKIHNTEVIEVLKKQNIEARLYFSP
SCHQQDFFKQYKSTDLTNTNKIAKQIISLPLWEGMTQEIVEQIIMCLMQKVVSTDE

Sequences:

>Translated_376_residues
MNSIPFLRASIVPVNEYLGELEKMDISHIYTNYGPLNQHFEEKIMSEFFDSKGAVTTVANATLGLMAAIQFKKRKKGKYA
LMPSFTFPATPLAAIWCGLEPYFIDVSLDDWCMDKTLLLDKIDELKDEVAVVVPYATFGSWMDLKEYEELERKGIPVVVD
AAPGFGLMHEGIHYGQNFSGMMVYSFHATKPFGIGEGGMIYSNNEEEINQIKRMGNFGFDHNRECTMMGFNCKMTEYAAA
IGIATMNKWNEKVQERNRISEWYTQLLQSTGLMKKGWEVQKTEAVIHQFMPILCPEKIHNTEVIEVLKKQNIEARLYFSP
SCHQQDFFKQYKSTDLTNTNKIAKQIISLPLWEGMTQEIVEQIIMCLMQKVVSTDE
>Mature_376_residues
MNSIPFLRASIVPVNEYLGELEKMDISHIYTNYGPLNQHFEEKIMSEFFDSKGAVTTVANATLGLMAAIQFKKRKKGKYA
LMPSFTFPATPLAAIWCGLEPYFIDVSLDDWCMDKTLLLDKIDELKDEVAVVVPYATFGSWMDLKEYEELERKGIPVVVD
AAPGFGLMHEGIHYGQNFSGMMVYSFHATKPFGIGEGGMIYSNNEEEINQIKRMGNFGFDHNRECTMMGFNCKMTEYAAA
IGIATMNKWNEKVQERNRISEWYTQLLQSTGLMKKGWEVQKTEAVIHQFMPILCPEKIHNTEVIEVLKKQNIEARLYFSP
SCHQQDFFKQYKSTDLTNTNKIAKQIISLPLWEGMTQEIVEQIIMCLMQKVVSTDE

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=381, Percent_Identity=25.4593175853018, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43060; Mature: 43060

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIPFLRASIVPVNEYLGELEKMDISHIYTNYGPLNQHFEEKIMSEFFDSKGAVTTVAN
CCCCCCHHEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEHHHH
ATLGLMAAIQFKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDVSLDDWCMDKTLLLD
HHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
KIDELKDEVAVVVPYATFGSWMDLKEYEELERKGIPVVVDAAPGFGLMHEGIHYGQNFSG
HHHHHHCCEEEEEEEHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCC
MMVYSFHATKPFGIGEGGMIYSNNEEEINQIKRMGNFGFDHNRECTMMGFNCKMTEYAAA
EEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
IGIATMNKWNEKVQERNRISEWYTQLLQSTGLMKKGWEVQKTEAVIHQFMPILCPEKIHN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCHHHCCC
TEVIEVLKKQNIEARLYFSPSCHQQDFFKQYKSTDLTNTNKIAKQIISLPLWEGMTQEIV
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCHHCCCHHHHHH
EQIIMCLMQKVVSTDE
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSIPFLRASIVPVNEYLGELEKMDISHIYTNYGPLNQHFEEKIMSEFFDSKGAVTTVAN
CCCCCCHHEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEHHHH
ATLGLMAAIQFKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDVSLDDWCMDKTLLLD
HHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
KIDELKDEVAVVVPYATFGSWMDLKEYEELERKGIPVVVDAAPGFGLMHEGIHYGQNFSG
HHHHHHCCEEEEEEEHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCC
MMVYSFHATKPFGIGEGGMIYSNNEEEINQIKRMGNFGFDHNRECTMMGFNCKMTEYAAA
EEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
IGIATMNKWNEKVQERNRISEWYTQLLQSTGLMKKGWEVQKTEAVIHQFMPILCPEKIHN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCHHHCCC
TEVIEVLKKQNIEARLYFSPSCHQQDFFKQYKSTDLTNTNKIAKQIISLPLWEGMTQEIV
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCHHCCCHHHHHH
EQIIMCLMQKVVSTDE
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]