Click here to switch to the map view.

The map label for this gene is ykrA [H]

Identifier: 52141516

GI number: 52141516

Start: 3869903

End: 3870676

Strand: Reverse

Name: ykrA [H]

Synonym: BCZK3733

Alternate gene names: 52141516

Gene position: 3870676-3869903 (Counterclockwise)

Preceding gene: 52141512

Following gene: 52141518

Centisome position: 73.02

GC content: 33.98

Gene sequence:

>774_bases
ATGAATGATAAAATTGTCTTTTTTGATATTGATGGAACATTATTAAATCATGATAAAAAAATTCCGCAATCTACACGAGA
TGCAGTAAGACAGTTACAAGAGAAGGGCGTACATGTAGCAATTGCGACAGGACGTGCTCCATTTATGTTCGAAGATATTC
GTAAGGAACTTAATATCCACAATTATGTTAGTTTTAATGGACAGTACGTTGTATTTGAAGATGAAGTAGTATTTAATAAT
CCATTACATCCAGCTGCTCTACATAAATTTACTCAGTTTGCAAAACAAGAAGGATATCCGCTTGTATATCTTGATCATCA
AGAAATGAGAGCATCAGTGGAATATCATGATTATGTGAAAGAAGGCTTTGGTAGCTTAAACTTTGAGCATCCAGCATATG
AACCTAATTTTTATGAGAAACGTAATATTTATCAAACGCTTCTTTTCTGTGAAGTGAATGAAGAAGAAAAGTTTATTAAT
CAGTACCCAGACTTTCATTTTATTCGCTGGCATGCGTATTCAATGGATATCATTCCAAATGGTGGTTCTAAGGCAAAAGG
GATTGAGAAATTCATTGAAAAATTAGGATTTAACCGTGAACAAGTGTATGCATTTGGGGATGGCTTAAATGATTTAGAAA
TGATTGAAGCGGTTGGAACAGGTATTGTAATGGGGAATGGTCATGAAGACTTGAAAAAACTTGCAAATCATGTGACAAAG
GATGTTAGTGAAGACGGCATATATCATGGATTAAAATGGGCTGGATTGTTATAA

Upstream 100 bases:

>100_bases
ACGCTTTCTTCACAGATGTTTAATATGTTATACTTTTTTTTAGCATTTGAAAAGCGATAATCAAAATAGGAATATACAGT
AACAGAAAGGATTTTGACAA

Downstream 100 bases:

>100_bases
GTGGATATGGAACCCATTTCATAATAGTAAAAAGGCGGAGGATTATCTTCCGCCTTTTTTTATTATCGCTCCAGAGGTTT
TGAACCGTCAGGAGCAGCAA

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNDKIVFFDIDGTLLNHDKKIPQSTRDAVRQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVVFNN
PLHPAALHKFTQFAKQEGYPLVYLDHQEMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEKRNIYQTLLFCEVNEEEKFIN
QYPDFHFIRWHAYSMDIIPNGGSKAKGIEKFIEKLGFNREQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVSEDGIYHGLKWAGLL

Sequences:

>Translated_257_residues
MNDKIVFFDIDGTLLNHDKKIPQSTRDAVRQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVVFNN
PLHPAALHKFTQFAKQEGYPLVYLDHQEMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEKRNIYQTLLFCEVNEEEKFIN
QYPDFHFIRWHAYSMDIIPNGGSKAKGIEKFIEKLGFNREQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVSEDGIYHGLKWAGLL
>Mature_257_residues
MNDKIVFFDIDGTLLNHDKKIPQSTRDAVRQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVVFNN
PLHPAALHKFTQFAKQEGYPLVYLDHQEMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEKRNIYQTLLFCEVNEEEKFIN
QYPDFHFIRWHAYSMDIIPNGGSKAKGIEKFIEKLGFNREQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVSEDGIYHGLKWAGLL

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI1786982, Length=271, Percent_Identity=27.6752767527675, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI48994981, Length=256, Percent_Identity=26.5625, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 29714; Mature: 29714

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS01228 COF_1 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKIVFFDIDGTLLNHDKKIPQSTRDAVRQLQEKGVHVAIATGRAPFMFEDIRKELNIH
CCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
NYVSFNGQYVVFEDEVVFNNPLHPAALHKFTQFAKQEGYPLVYLDHQEMRASVEYHDYVK
EEEEECCEEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHH
EGFGSLNFEHPAYEPNFYEKRNIYQTLLFCEVNEEEKFINQYPDFHFIRWHAYSMDIIPN
HHCCCCCCCCCCCCCCCHHHHHHEEEEEEEEECCHHHHHHHCCCEEEEEEEEEEEEEEEC
GGSKAKGIEKFIEKLGFNREQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
CCCCHHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHH
DVSEDGIYHGLKWAGLL
CCCCCCHHCCCHHCCCC
>Mature Secondary Structure
MNDKIVFFDIDGTLLNHDKKIPQSTRDAVRQLQEKGVHVAIATGRAPFMFEDIRKELNIH
CCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
NYVSFNGQYVVFEDEVVFNNPLHPAALHKFTQFAKQEGYPLVYLDHQEMRASVEYHDYVK
EEEEECCEEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHH
EGFGSLNFEHPAYEPNFYEKRNIYQTLLFCEVNEEEKFINQYPDFHFIRWHAYSMDIIPN
HHCCCCCCCCCCCCCCCHHHHHHEEEEEEEEECCHHHHHHHCCCEEEEEEEEEEEEEEEC
GGSKAKGIEKFIEKLGFNREQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
CCCCHHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHH
DVSEDGIYHGLKWAGLL
CCCCCCHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]