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The map label for this gene is scpB [H]

Identifier: 52141435

GI number: 52141435

Start: 3948501

End: 3949073

Strand: Reverse

Name: scpB [H]

Synonym: BCZK3813

Alternate gene names: 52141435

Gene position: 3949073-3948501 (Counterclockwise)

Preceding gene: 52141434

Following gene: 52141436

Centisome position: 74.5

GC content: 36.47

Gene sequence:

>573_bases
ATGGATAGAACAGAACAAAAATCAATTATTGAAGGGCTTTTATTTGTTTCTGGTGATGAAGGGATTTATCCTGAACAAAT
AGCAAAAGTCCTTGAAATTGAAGGAAACGAAGTAATCGATATTTTAGAAGAAATGCAAAAAGAATGTGAAGGTGCACACC
GCGGTTTGCAAATTGTACAGTATGCAAAAGTGTATCGTTTTGCTACAAAGAAAGAACATGCGTCGTACTATCAAAAACTA
ATAGATATCCCAACAGCTGCTTCACTCTCTCAGGCCGCTCTAGAAACGTTAGCGATTGTTGCATATCGTCAACCAATTAC
AAGAACTGAAATGGAAGAGATTAGAGGGGTAAAAACCGATAAGGCGTTACAAACGTTAGTATCACACTTACTTATAAAAG
AAATGGGAAGAGCAGAAGGACCTGGGCGTCCTATTTTATATGGAACGACGAAAGAATTTTTGGACACGTTTGGATTAAAA
ACATTAGATGATTTACCTCCGCTTTCTGAAGAAAACGAACAAATGAATGAAGCGGATTTATTCTTCGGTTCTTTACAAGA
GATATCGAAATAA

Upstream 100 bases:

>100_bases
TTTGGAACAAGAGAAAAAATATTGAACCGAACGCATTGATTGTGATTCGGTTTTTTGATGTGTATTTTTATGGAAAAAAT
AGGAGGAAGGAGTTCGTAAA

Downstream 100 bases:

>100_bases
AAGCTTAGCATTTTGCTAAGCTTTTTTTGTATATCAATTATATACCGTGCCATACTAATTGAAAAAAGGAGACGAGTTAT
GAGAGGTATACGAAGTATTT

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK

Sequences:

>Translated_190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK
>Mature_190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 21410; Mature: 21410

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQ
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YAKVYRFATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
KALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPLSEENEQMNEADL
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHH
FFGSLQEISK
HHHHHHHHCC
>Mature Secondary Structure
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQ
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YAKVYRFATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
KALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPLSEENEQMNEADL
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHH
FFGSLQEISK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA