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The map label for this gene is deoB [H]

Identifier: 52141405

GI number: 52141405

Start: 3973981

End: 3975165

Strand: Reverse

Name: deoB [H]

Synonym: BCZK3844

Alternate gene names: 52141405

Gene position: 3975165-3973981 (Counterclockwise)

Preceding gene: 52141404

Following gene: 52141407

Centisome position: 74.99

GC content: 38.57

Gene sequence:

>1185_bases
ATGAATAAATATAAACGTATATTCCTAGTCGTAATGGACTCTGTTGGAATCGGTGAAGCACCAGATGCTGAACAATTTGG
TGATTTAGGATCTGACACAATTGGTCACATTGCTGAGCATATGAATGGGTTACAAATGCCTAACATGGTGAAATTAGGTC
TTGGTAACATTCGTGAAATGAAAGGCATCTCTAAAGTAGAAAAACCACTTGGATATTATACAAAAATGCAAGAGAAATCT
ACTGGTAAAGATACAATGACAGGACACTGGGAAATCATGGGCCTTTACATTGATACACCATTCCAAGTGTTCCCAGAAGG
TTTCCCAAAAGAATTACTTGATGAATTAGAAGAAAAAACAGGCCGTAAAATCATCGGTAATAAACCAGCTTCTGGAACTG
AAATTCTTGATGAACTTGGTCAAGAACAAATGGAAACAGGCTCTTTAATTGTTTACACTTCTGCCGATAGCGTTCTGCAA
ATCGCAGCACACGAAGAAGTAGTGCCGCTTGATGAGTTATATAAAATTTGTAAAATTGCACGTGAATTAACGTTAGATGA
GAAGTACATGGTAGGCCGCGTTATCGCTCGTCCATTCGTTGGTGAGCCTGGAAACTTTACACGTACACCTAACCGTCATG
ACTATGCATTAAAACCATTCGGCCGTACAGTAATGAATGAATTAAAAGATAGTGATTATGATGTGATTGCTATCGGTAAA
ATCTCTGATATCTATGATGGTGAAGGGGTAACTGAATCACTTCGTACGAAGTCTAACATGGATGGAATGGATAAGCTTGT
AGATACATTAAATATGGACTTTACAGGTCTTAGCTTCTTAAACTTAGTTGACTTTGATGCGCTATTCGGTCACCGTCGTG
ACCCACAAGGATACGGAGAAGCTCTACAAGAATATGATGCACGTCTTCCAGAAGTATTCGAAAAACTAAAAGAAGATGAT
TTATTATTAATTACAGCAGACCACGGTAATGACCCAGTTCATCATGGTACTGATCATACACGTGAATATGTACCGTTATT
AGCATATAGCCCAAGCATGAAAGAAGGCGGACAAGAATTACCACTTCGTCAAACATTTGCTGATATTGGTGCAACTGTAG
CAGAAAACTTCGGTGTGAAAATGCCAGAATACGGAACAAGCTTCTTAAACGAGCTAAAGAAATAG

Upstream 100 bases:

>100_bases
TAATGAGAACGAAAGATAATTCTTATGGAGAACAGTTTCACTTTATAGCGTTTTGAACATACTACAAGAAGTAGAACTGA
ACTTATAGGAGGTCGCAGTT

Downstream 100 bases:

>100_bases
GGGGATAAACAAATGAATCGTGAACTTATTACAAAATCAGCTTCATACTTAAAAGAGAAATTTCAAGAGACACCACAAGT
AGGACTAATCCTTGGATCTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Sequences:

>Translated_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
>Mature_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=46.3592233009709, Blast_Score=340, Evalue=8e-95,
Organism=Escherichia coli, GI1789781, Length=434, Percent_Identity=27.1889400921659, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44105; Mature: 44105

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA