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The map label for this gene is ycdB [H]

Identifier: 52141162

GI number: 52141162

Start: 4195079

End: 4196575

Strand: Reverse

Name: ycdB [H]

Synonym: BCZK4089

Alternate gene names: 52141162

Gene position: 4196575-4195079 (Counterclockwise)

Preceding gene: 52141160

Following gene: 52141161

Centisome position: 79.17

GC content: 33.8

Gene sequence:

>1497_bases
ATGATGAATCAAAAAGATAAAGAAAGAAAAGAGCAAGTGGCTCATATTATTAAAATTCCAGATGATTATAGGCTTGTTGT
AGATGATCAAGAAGGTGTGGATGACCCATATCATCTATTATGGTGGGAGCATAAAGCGGATGAGGAGAGAACAATACAGA
TTACGTTGAATAGAAATATCGGTAGTTTAATTGACTTTAGGATAGAGGATGAAAAAGCTTTTTCGAGCAGTGAGAAAGCG
ATAGAGGACAATCAAGCAAGAGAGATTGCAAATACATTCTTAAAAAAATATACAAAAGAAGGCTCTGAATTTTATACATA
TGTAATTGTTAAGGGTGACAAGCACGGTTGGAAAGAAGTAAATTATATGCAAGAAGTGAATGGCTATCCATTGCCGAATA
CAGGGTGTGTTGTGCAAGTTCACTCTTCAGGAAATGTTGTGAATTTCCATTACAATGGACAAAAAACGATAGAGAAAAAA
CCATCATGGCCAAATGAAATTGTTGAGGAGAACGTCGTTTTAGAAAATTTGAAAGCTAGACAAGATATGAGACTTGTATT
TGTAGATTTAACATACTCTTCATGTGAGTATGAAAACAGGGAAGAAGTAAAAGGGTACCATCTTGTATATGAACCAGAGC
CTAGTCATGCATGTATTGATGCAAGTACAGGTAAAGATTTATATGGGCCAGAACATTATAAATTACCGCCAACAGTAGTT
GTTGAAAAAATAGAAGAAGGTAACCGGCAAGATGACATATTCGAATTATTTGACTGGGATAAAGAAAGTTTTGCAAAAGT
AGATGAGACGGAAAATGATAATGAAATAAGGATGAAATTTGTTTTGAAGGAGGAATTACAAAAACAGAAAGAAGAAAAGA
ATCCATATTTAATGAATGAATTCTTTAAAAAGCATTTACCGATGTTAAAATATAATAATTTGATTGGCATTACGGTTGAC
AAATTAACCAATGAATTAATTGGCTTTATAAAACTGACAGAAGATAAAGAAGCAAAACAAATACTGTCTAGAGAGGAATG
TTTACAAAAAGCAATTCAATTTTTAGAGTGTGTTATTCCGGATATCACACAATATCTTCGTCTTTGGGAGGAACGTGAAG
AAGCAGAAGATGGGATTGAAAGATTTAACTTCTCAGTATATGTGAATGGTATTCCGGCAGAGTATAAGCACTTTATGATC
AATATCAACGCGGAAAATGGTGCAGTGATGCATTACTCTGGAGAGTCTAGCAAATTTATAAAAGAATTGCTCACATACGA
AACAACACCAAAAGTAACGAAAGAAGAAGCGTTAGAAATATACAGAAATGCTATCCGAGTTAAATTAGAATGGTCTATAG
ATCATAATGTAGAGGAAACGGTATATCAATTGCTGTATAAACAAACAACGGGTGAAAATTATAAAGAATGCTTCGACGGT
AGTCGAGAAGTTCGTTATATTGATGCGCATACTGGTGAGAAAATTTGGAGCAAGTAA

Upstream 100 bases:

>100_bases
AACGAAGTAGAAGACTAGAGATATCTCTAGTCTTTTTTTGTTTATATTTTTTGGTTGAGTTTGTTATAATTACCTTAAAT
TGTAATAAAGGGGGGGCGGT

Downstream 100 bases:

>100_bases
AATAAAAAGAGTTATTTTGAACTGCACCCCAATTGTTAGACTGTGTCTAACAATTGGAGGTGCAGTTTTTCTATGGCTAA
ATTTACAGCGGATGAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MMNQKDKERKEQVAHIIKIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRNIGSLIDFRIEDEKAFSSSEKA
IEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHSSGNVVNFHYNGQKTIEKK
PSWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVV
VEKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLIGITVD
KLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMI
NINAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRNAIRVKLEWSIDHNVEETVYQLLYKQTTGENYKECFDG
SREVRYIDAHTGEKIWSK

Sequences:

>Translated_498_residues
MMNQKDKERKEQVAHIIKIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRNIGSLIDFRIEDEKAFSSSEKA
IEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHSSGNVVNFHYNGQKTIEKK
PSWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVV
VEKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLIGITVD
KLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMI
NINAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRNAIRVKLEWSIDHNVEETVYQLLYKQTTGENYKECFDG
SREVRYIDAHTGEKIWSK
>Mature_498_residues
MMNQKDKERKEQVAHIIKIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRNIGSLIDFRIEDEKAFSSSEKA
IEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHSSGNVVNFHYNGQKTIEKK
PSWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVV
VEKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLIGITVD
KLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMI
NINAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRNAIRVKLEWSIDHNVEETVYQLLYKQTTGENYKECFDG
SREVRYIDAHTGEKIWSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycdC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 58667; Mature: 58667

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNQKDKERKEQVAHIIKIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRNI
CCCCCHHHHHHHHHHHEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCC
GSLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEV
CCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHH
NYMQEVNGYPLPNTGCVVQVHSSGNVVNFHYNGQKTIEKKPSWPNEIVEENVVLENLKAR
HHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHCC
QDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVV
CCEEEEEEEEEECCCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHH
VEKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNE
HHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHH
FFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIP
HHHHCCCCEECCCEEEEEHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGESSKFI
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCHHHHH
KELLTYETTPKVTKEEALEIYRNAIRVKLEWSIDHNVEETVYQLLYKQTTGENYKECFDG
HHHHCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCC
SREVRYIDAHTGEKIWSK
CCEEEEEECCCCCHHHCC
>Mature Secondary Structure
MMNQKDKERKEQVAHIIKIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRNI
CCCCCHHHHHHHHHHHEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCC
GSLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEV
CCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHH
NYMQEVNGYPLPNTGCVVQVHSSGNVVNFHYNGQKTIEKKPSWPNEIVEENVVLENLKAR
HHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHCC
QDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVV
CCEEEEEEEEEECCCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHH
VEKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNE
HHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHH
FFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIP
HHHHCCCCEECCCEEEEEHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGESSKFI
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCHHHHH
KELLTYETTPKVTKEEALEIYRNAIRVKLEWSIDHNVEETVYQLLYKQTTGENYKECFDG
HHHHCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCC
SREVRYIDAHTGEKIWSK
CCEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]