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The map label for this gene is radC [C]

Identifier: 52141051

GI number: 52141051

Start: 4303904

End: 4304581

Strand: Reverse

Name: radC [C]

Synonym: BCZK4198

Alternate gene names: 52141051

Gene position: 4304581-4303904 (Counterclockwise)

Preceding gene: 52141052

Following gene: 52141053

Centisome position: 81.2

GC content: 39.38

Gene sequence:

>678_bases
ATGAACGGTATTCGTGATGTTGTCAAAGAAGAACAGCCACGGGAGCGTTTATTGTTGGAGGGAGCTGGAAGTTTATCAAA
TCGGGAGCTTCTTGCAGTGTTACTGAGAACGGGTTCTAAGGAAGAATCAGTTTTGAAGTTATCAGATAAAATTTTACATC
ACTTTGATGGTTTACGTATGTTGAAAGACGCAACGCTAGAAGAGTTAGTGAGTATACATGGTGTTGGAGTTGCGAAGGCA
TCACAGCTCATCGCTGCTTTTGAACTCGGTAGAAGAATGGTACGTTTAGAATATCAAAATAGATACAGTATTCGAAACCC
GGAAGATTGCGCTAGATACATGATGGAAGAAATGCGCTTCTTGCAGCAGGAGCATTTTGTATGTTTATATTTGAACACAA
AGAATCAAGTCATACATAGGCAAACGATTTTCATTGGAAGTTTAAATTCATCAATTGTACATCCAAGGGAAGTTTTTAAA
GAAGCATTTCGCCGTGCAGCAGCCTCTATCATATGTCTTCATAACCATCCCTCAGGAGACCCAGCGCCGAGCCGAGAAGA
TATTGAAGTAACGAAACGCTTAGTAGAATGCGGTCGAATTATCGGAATTGAAGTGCTTGATCATATTATAATAGGTGACC
ATAAATTCGTGAGTTTAAAGGAAAAAGGTCATATTTAA

Upstream 100 bases:

>100_bases
TCACGTCTTGTTCGGGAATTAAAACAATTTAATATTGATGTAACCCATGCGTAAAATTGCATGGGATTTTCTTTGAGAGA
ACAAATAAAGGGGTGGAGAA

Downstream 100 bases:

>100_bases
GGCTATGCTTTTTACTTATTTTGTTTTATAATGTGATTTATGAGTTTTTTGTAGAAAATTATCTACAAAAAGGATAAAGA
TATAAAAAACGTACTGTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
SQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI

Sequences:

>Translated_225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
SQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
>Mature_225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
SQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=36.150234741784, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1788997, Length=111, Percent_Identity=45.045045045045, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=42.3423423423423, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367100, Length=111, Percent_Identity=42.3423423423423, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25700; Mature: 25700

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA