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The map label for this gene is tctD [C]

Identifier: 52141001

GI number: 52141001

Start: 4360371

End: 4361066

Strand: Direct

Name: tctD [C]

Synonym: BCZK4249

Alternate gene names: 52141001

Gene position: 4360371-4361066 (Clockwise)

Preceding gene: 52141002

Following gene: 52141000

Centisome position: 82.26

GC content: 34.63

Gene sequence:

>696_bases
ATGAATGTGCTATTAGTAGATGACGAGCCGCTAGAACTGGAACAATTAGAGTTTCTCATTCACCGCCAGTTTCCTAATTG
GACATTACATCTAGCTTTAGATGTAGCTGAAGCTTTAAGTATAAATGAAAAATTCTCAATTCATTTAGCACTTTTAGATA
TTCACCTTCCAGGCATATCTGGCCTACAACTAGGTGAAAAATTAAAAAATAATAACTCTAACCTCGACATCATTATCGTA
ACCGCATATCAAAATTTCGACTATGCAAAACAATCTATTCGTCTAGGAGTTATTGACTACATAACAAAGCCAATTATAGA
AAAAGAACTCATCGATGTATTGCAAAAATACAAAGGAAATTCCAATATTATTTCTTACTCACGTATTATTCAAGATACAT
TAGACATCATTCATGAGACTTTTTCTGACAAACTACACTTAGCAGACATCGCGGCTAAAGTACATACAAATCCAACTTAC
TTAAGCCGAAGATTCCATGAAGAAGTAGGGGTTTCATTTTCCGGGTATATCATGCAATATCGTATTGAAATGTCACAGAA
ATATTTAACGGAACACCCACATTGGTGCATCTCTCAAATTTCTGAACGATCTGGTTTTAATAGCCAGCATTATTTCAGTA
CTGTTTTTCGTAAAATGACTGGAATGACTCCGAAAGAATATAGAGGCGAGGGATAA

Upstream 100 bases:

>100_bases
AAACTACGTTCTCTTTCCTCTCTACAAAAGAGAACGGCACAACAGTAGAAATAACATGGCCTTTCATCACAGAAAAAAAC
ACAGAGGAGGTAATACAAAA

Downstream 100 bases:

>100_bases
ATTGTGACAAAAAACAACACAGTTTTCACATCTTTACAATTAGGTATCGGAACTGGCACTGTTCTTTTATTATCTAAATG
GGTCGCAAGTATATCAACAC

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDVAEALSINEKFSIHLALLDIHLPGISGLQLGEKLKNNNSNLDIIIV
TAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGNSNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTY
LSRRFHEEVGVSFSGYIMQYRIEMSQKYLTEHPHWCISQISERSGFNSQHYFSTVFRKMTGMTPKEYRGEG

Sequences:

>Translated_231_residues
MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDVAEALSINEKFSIHLALLDIHLPGISGLQLGEKLKNNNSNLDIIIV
TAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGNSNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTY
LSRRFHEEVGVSFSGYIMQYRIEMSQKYLTEHPHWCISQISERSGFNSQHYFSTVFRKMTGMTPKEYRGEG
>Mature_231_residues
MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDVAEALSINEKFSIHLALLDIHLPGISGLQLGEKLKNNNSNLDIIIV
TAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGNSNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTY
LSRRFHEEVGVSFSGYIMQYRIEMSQKYLTEHPHWCISQISERSGFNSQHYFSTVFRKMTGMTPKEYRGEG

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786838, Length=202, Percent_Identity=23.2673267326733, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26741; Mature: 26741

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDVAEALSINEKFSIHLALLDIHLPGIS
CEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCEEEEEEEEEEECCCCC
GLQLGEKLKNNNSNLDIIIVTAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGN
CHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTYLSRRFHEEVGVSFSGYIMQY
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHEE
RIEMSQKYLTEHPHWCISQISERSGFNSQHYFSTVFRKMTGMTPKEYRGEG
HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCCCC
>Mature Secondary Structure
MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDVAEALSINEKFSIHLALLDIHLPGIS
CEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCEEEEEEEEEEECCCCC
GLQLGEKLKNNNSNLDIIIVTAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGN
CHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTYLSRRFHEEVGVSFSGYIMQY
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHEE
RIEMSQKYLTEHPHWCISQISERSGFNSQHYFSTVFRKMTGMTPKEYRGEG
HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA