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The map label for this gene is ysdC [H]

Identifier: 52140937

GI number: 52140937

Start: 4426150

End: 4427235

Strand: Reverse

Name: ysdC [H]

Synonym: BCZK4313

Alternate gene names: 52140937

Gene position: 4427235-4426150 (Counterclockwise)

Preceding gene: 52140936

Following gene: 52140939

Centisome position: 83.52

GC content: 40.33

Gene sequence:

>1086_bases
ATGACAAAATTAGACGAGACATTGACAATGCTAAAAGAATTAACAGATGCACGCGGTATTGCGGGTAACGAGCGTGAACC
ACGTGAAGTAATGAAGAAATATATTGAGCCGTTTGCGGACGAACTTTCTACTGATAATTTAGGAAGTTTAGTTGCGAAAA
AAGTAGGGGAAGAAAACGGCCCGAAAATTATGGTTGCAGGTCATTTAGATGAAGTTGGCTTTATGATTACGCAAATTGAT
GAAAAAGGTTTCCTTCGTTTCCAAACAGTTGGTGGCTGGTGGTCACAAGTTATGCTTGCGCAGCGCGTGACAATTGTAAC
GCGTAAAGGAGATGTAACAGGTGTAATCGGTTCAAAACCACCGCATATCTTACCTCCAGAAGCGCGTAAAAAGCCAGTTG
AAATTAAAGACATGTTCATCGATATTGGTGCTTCTAGCCAAGAAGAAGCAATGGAGTGGGGCGTACGACCAGGAGATCAA
GTTGTACCTTATTTTGAATTCCAAGTGATGAAGAATGAAAAAATGTTACTTGCAAAAGCATGGGATAACCGAATTGGTTG
TGCAATTGCAATTGACGTATTAAAACAATTAAAAGATGAAAAGCATCCAAACGTTGTATACGGCGTAGGGACTGTACAAG
AAGAAGTCGGTCTTCGTGGTGCGAAAACATCTGCAAACTATATTAAACCAGATATCGCATTCGCAGTAGATGTTGGTATC
GCTGGTGACACACCGGGGGTAACGTCAAAAGAAGCGCAAAGTAAAATGGGTGATGGACCACAGATCATTTTATATGATGC
TTCTGTTATCGGTCATACCGGTTTACGTGACTTTGTAGTTGATGTTGCTGATGAATTACAAATTCCATACCAATATGATT
CAGTAGCGGGCGGAGGAACGGATGCAGGTGCAATTCATATTGCTGTAAATGGTATTCCGTCTATGGCAATTACGATTGCA
ACTCGTTACATTCATTCTCACGCGGCAATGTTACACCGTGACGACTATGAAAATGCAGTGAAGTTAATTGTAGAAGTTAT
TAAACGTCTTGATAAAGAGGCTGTACATAACATTACATTTAATTAA

Upstream 100 bases:

>100_bases
AAATCATCAGCGTCAAACACAAGGATACTAAGTTAATTTTTGAATATTTCAATTTCCTTTTGTATAATGAAGTGACTGAA
GAAAAAGGAGGGTGTTGGCA

Downstream 100 bases:

>100_bases
TAGAAAAGCGAAGGAGCCTCTCCTTCGCTTTTCTATGTTTTAAAAAGGTCGTTCTAATCCCGCTGCAGTATGAGCCCCTA
AAATGATTAAACGAGTTAAT

Product: glucanase/ deblocking aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
EKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQ
VVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Sequences:

>Translated_361_residues
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
EKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQ
VVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN
>Mature_360_residues
TKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQIDE
KGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQV
VPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGIA
GDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIAT
RYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=40.8450704225352, Blast_Score=288, Evalue=4e-79,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=33.2386363636364, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI87082417, Length=343, Percent_Identity=30.9037900874636, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39583; Mature: 39452

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PKIMVAGHLDEVGFMITQIDEKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKP
CEEEEEECCHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQVVPYFEFQVMKNEKMLLAKA
CCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGT
CCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
DAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
N
C
>Mature Secondary Structure 
TKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PKIMVAGHLDEVGFMITQIDEKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKP
CEEEEEECCHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQVVPYFEFQVMKNEKMLLAKA
CCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGT
CCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
DAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]